| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,668,100 – 7,668,212 |
| Length | 112 |
| Max. P | 0.586269 |
| Location | 7,668,100 – 7,668,212 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 94.05 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -29.24 |
| Energy contribution | -29.13 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7668100 112 + 23771897 UCUGUUUUGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCUUAGCUGAACCGGCCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAGGCACAUACGUUUAGAUG ((((((........))))))((((........(((((((((.((((...((((((((........)))).))).)...)))).)))))))))..)))).............. ( -30.70) >DroEre_CAF1 42602 112 + 1 UCUGUUUCGCAAUCAACAGAUGCCAAGUUCCAGAUGGAGCUCAGCUGAACCGACCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAGGCACAUACGUUCAGAUG ((((...((((.((....)))))...((.((.(((((((((.((((...((((((((........)))).))).)...)))).)))))))))..)).))....)..)))).. ( -32.20) >DroYak_CAF1 44154 112 + 1 UCUGUUUCGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCAUAGCUGAACCGACCCAACUUAAACUGGGAUUGAGAUGAGCUUAGCUUCAUUCAGGUACAUACGUUUAGAUG ((((((........)))))).........((.((((((((..((((.(.((((((((........)))).))).).).))))..))))))))..))................ ( -27.80) >consensus UCUGUUUCGCAAUUAACAGAUGCCAAAUUCCAGAUGGAGCUUAGCUGAACCGACCCAACUUGAACUGGGAUUGAGAUAAGCUUAGCUUCAUUCAGGCACAUACGUUUAGAUG ((((((........))))))((((........(((((((((.((((...((((((((........)))).))).)...)))).)))))))))..)))).............. (-29.24 = -29.13 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:29 2006