Locus 2727

Sequence ID 3L_DroMel_CAF1
Location 7,631,160 – 7,631,261
Length 101
Max. P 0.971559
window4270 window4271

overview

Window 0

Location 7,631,160 – 7,631,261
Length 101
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.97
Mean single sequence MFE -37.97
Consensus MFE -30.96
Energy contribution -30.60
Covariance contribution -0.36
Combinations/Pair 1.21
Mean z-score -2.77
Structure conservation index 0.82
SVM decision value 1.68
SVM RNA-class probability 0.971559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7631160 101 + 23771897
UGACUCUUCCUUGAACAGAUC---------------CUUCUUCCCGCUCCAGCUUCUGCUUUAGCAGGGCUUCGAUGCUCUCUACUUGACUUGAGGGCACCACUUCGGUGCGGGUU
.....................---------------......(((((.((((((.((((....))))))))..(.(((((((..........))))))).).....)).))))).. ( -33.00)
>DroPse_CAF1 23378 116 + 1
CCAUCUUCACCGACGCGGAUCCCUGCUUAGUGUCACCCUCCUCCAGCUCCAGCUUCUGCUUUAGCAGGGCUUCAAUGUUUUCCGCUUGGCCGGAGGGCACCACUUCGGUGCGGGUA
..((((.((((((.((((....))))..((((...((((((....(((..(((....)))..)))..((((.....((.....))..))))))))))...)))))))))).)))). ( -43.50)
>DroSec_CAF1 16256 101 + 1
UGACUUUACCUUGAAGAAAUC---------------CUUCCUCCCGCUCCAGCUUCUGCUUCAGCAGGGCUUCAAUGCUCUCAACUUGACUUGAGGGCACCACUUCGGUGCGGGUU
............((((.....---------------))))..(((((.((((((.((((....))))))))....(((((((((......))))))))).......)).))))).. ( -36.80)
>DroEre_CAF1 19805 101 + 1
UGACUUUCCCUUGAACGGAUC---------------CUUCCUCCCGCUCCAGCUUCUGCUUUAGCAGCGCUUCGAUGCUCUCUACUUGACUGGAGGGCACCACUUCGGUGCGGGUU
................(((..---------------..))).(((((.(((((..((((....)))).)))..(.(((((((((......))))))))).).....)).))))).. ( -36.10)
>DroYak_CAF1 17109 101 + 1
UGACUUUGCCUUGAACGGAUC---------------CUUCCUCCCGCUCCAGCUUCUGCUUUAGCAGGGCUUCGAUACUCUCCACUUGACUGGAGGGCACCACUUCGGUGCGGGUU
................(((..---------------..))).(((((.((((((.((((....))))))))......(((((((......))))))).........)).))))).. ( -34.90)
>DroPer_CAF1 25212 116 + 1
CCAUCUUCACCGACGCGGAUCCCUGCUUAGUGUCACCCUCCUCCAGCUCCAGCUUCUGCUUUAGCAGGGCUUCAAUGUUUUCCGCUUGGCCGGAGGGCACCACUUCGGUGCGGGUA
..((((.((((((.((((....))))..((((...((((((....(((..(((....)))..)))..((((.....((.....))..))))))))))...)))))))))).)))). ( -43.50)
>consensus
UGACUUUCCCUUGAACGGAUC_______________CUUCCUCCCGCUCCAGCUUCUGCUUUAGCAGGGCUUCAAUGCUCUCCACUUGACUGGAGGGCACCACUUCGGUGCGGGUU
..........................................(((((.((((((.((((....))))))))....(((((((((......))))))))).......)).))))).. (-30.96 = -30.60 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 7,631,160 – 7,631,261
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.97
Mean single sequence MFE -38.15
Consensus MFE -28.34
Energy contribution -28.18
Covariance contribution -0.16
Combinations/Pair 1.26
Mean z-score -2.08
Structure conservation index 0.74
SVM decision value 1.33
SVM RNA-class probability 0.942861
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7631160 101 - 23771897
AACCCGCACCGAAGUGGUGCCCUCAAGUCAAGUAGAGAGCAUCGAAGCCCUGCUAAAGCAGAAGCUGGAGCGGGAAGAAG---------------GAUCUGUUCAAGGAAGAGUCA
..(((((.((....((((((.(((..........))).)))))).(((.((((....))))..))))).)))))......---------------((.((.(((...))).)))). ( -33.50)
>DroPse_CAF1 23378 116 - 1
UACCCGCACCGAAGUGGUGCCCUCCGGCCAAGCGGAAAACAUUGAAGCCCUGCUAAAGCAGAAGCUGGAGCUGGAGGAGGGUGACACUAAGCAGGGAUCCGCGUCGGUGAAGAUGG
((((((((((.....)))))(((((((((.(((((............))((((....))))..))).).)))))))).))))).((((..((.((...))))...))))....... ( -45.40)
>DroSec_CAF1 16256 101 - 1
AACCCGCACCGAAGUGGUGCCCUCAAGUCAAGUUGAGAGCAUUGAAGCCCUGCUGAAGCAGAAGCUGGAGCGGGAGGAAG---------------GAUUUCUUCAAGGUAAAGUCA
..(((((.((.....(((((.(((((......))))).)))))..(((.((((....))))..))))).)))))..((((---------------.....))))............ ( -33.90)
>DroEre_CAF1 19805 101 - 1
AACCCGCACCGAAGUGGUGCCCUCCAGUCAAGUAGAGAGCAUCGAAGCGCUGCUAAAGCAGAAGCUGGAGCGGGAGGAAG---------------GAUCCGUUCAAGGGAAAGUCA
..(((((.((....((((((.(((..........))).)))))).(((.((((....))))..))))).)))))..((..---------------..(((......)))....)). ( -34.10)
>DroYak_CAF1 17109 101 - 1
AACCCGCACCGAAGUGGUGCCCUCCAGUCAAGUGGAGAGUAUCGAAGCCCUGCUAAAGCAGAAGCUGGAGCGGGAGGAAG---------------GAUCCGUUCAAGGCAAAGUCA
..(((((.((....((((((.(((((......))))).)))))).(((.((((....))))..))))).))))).(((..---------------..)))......(((...))). ( -36.60)
>DroPer_CAF1 25212 116 - 1
UACCCGCACCGAAGUGGUGCCCUCCGGCCAAGCGGAAAACAUUGAAGCCCUGCUAAAGCAGAAGCUGGAGCUGGAGGAGGGUGACACUAAGCAGGGAUCCGCGUCGGUGAAGAUGG
((((((((((.....)))))(((((((((.(((((............))((((....))))..))).).)))))))).))))).((((..((.((...))))...))))....... ( -45.40)
>consensus
AACCCGCACCGAAGUGGUGCCCUCCAGUCAAGUGGAGAGCAUCGAAGCCCUGCUAAAGCAGAAGCUGGAGCGGGAGGAAG_______________GAUCCGUUCAAGGGAAAGUCA
..(((((.((.....(((((.(((((......))))).)))))..(((.((((....))))..))))).))))).(((...................)))................ (-28.34 = -28.18 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:21 2006