Locus 2717

Sequence ID 3L_DroMel_CAF1
Location 7,583,565 – 7,583,679
Length 114
Max. P 0.729687
window4255

overview

Window 5

Location 7,583,565 – 7,583,679
Length 114
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 83.85
Mean single sequence MFE -26.88
Consensus MFE -17.54
Energy contribution -19.54
Covariance contribution 2.00
Combinations/Pair 1.18
Mean z-score -2.04
Structure conservation index 0.65
SVM decision value 0.42
SVM RNA-class probability 0.729687
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7583565 114 - 23771897
ACGGAACUUUGCAGCUUUUUAGGUUCGGUCAGCUAGAUUUAAUAGACCUAUUAACUGGUAAAAAGGAAA---CCCAUUAAUAAACUGUACUUAAGAAUCGAAGCUGACUUUCUAAUU
...((((((...........))))))((((((((.(((((...(((((........))).....((...---.))..............))...)))))..))))))))........ ( -24.30)
>DroSec_CAF1 25828 114 - 1
ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCCAGCUUUAAUAGCCCUAUUAACGGGUAAAAUGGAAA---CCCAUUAAUGAACUGCACUUAAGAAUCUAAGCAGACUUUCUAAUU
..((((.(((((((.(((((((((.((((((.............((((.......))))..(((((...---.)))))..)).)))).))))))))).))..))))).))))..... ( -28.70)
>DroSim_CAF1 30822 114 - 1
ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAGCUUUAAUAGCCCUAUUAACUGGUAAAAAGGAAA---CCCAUUAAUGAACUGCACUUAAGAAUCUAAGCAGACUUUCUAAUU
..((((.(((((((.(((((((((.(((((((((((..((((((....))))))))))).....((...---.)).....)).)))).))))))))).))..))))).))))..... ( -26.90)
>DroEre_CAF1 28798 108 - 1
ACGCAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAUCUUUAAUAGCCCUAUUAAGUGGCAAAAAGGCAACCACCCAUCACUGACCUGUG---------CUUAUGCGACUUUCUAAUU
.((((.((((((.((((..((((........(((((.....)))))))))..)))).))))))(((((......((....)).....))---------))).))))........... ( -25.20)
>DroYak_CAF1 31220 114 - 1
ACGGAAUUUUGCAGCUUUUUAGGUGCAGUCAGCUAUUUUUAAUACCCCUAUUAAGUAGUAAAAGGGAAA---ACCAUCAUUGACCUGUAGCUAAGAAUCUUAGCAGACUUUCUAAUU
..((((.(((((((.(((((((.(((((((((((((..((((((....)))))))))))....((....---.)).....))).))))).))))))).))..))))).))))..... ( -29.30)
>consensus
ACGGAAUUUUGCAGCUUUUUAGGUUCGGUCAGCUAGCUUUAAUAGCCCUAUUAACUGGUAAAAAGGAAA___CCCAUUAAUGAACUGUACUUAAGAAUCUAAGCAGACUUUCUAAUU
..((((.(((((((.(((((((((.(((((((((((..((((((....))))))))))).....((.......)).....))).))).))))))))).))..))))).))))..... (-17.54 = -19.54 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:06 2006