| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,565,211 – 7,565,319 |
| Length | 108 |
| Max. P | 0.685680 |
| Location | 7,565,211 – 7,565,319 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -34.72 |
| Consensus MFE | -22.59 |
| Energy contribution | -23.72 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7565211 108 + 23771897 UCGCCUCUGGUUUCGUCGAAGUUUGGAGCCACAGGUGCAUUUCA---AGCCCAUACUU-CAACGAUUCAAGUUGAGCUGGGCGAUCCGACGCCCAGUUGUCAAUCAAGCGGA ((((.....(..((((.(((((.(((.(((...)))((......---.))))).))))-).))))..)..(((((((((((((......))))))))..)))))...)))). ( -38.00) >DroSec_CAF1 7731 108 + 1 UCGCCUCUGGUUUCGUCGAAGUUUGGAGCCACAGGUGCAUUUCA---GGCCCAUACUU-CAACGAUUCAAGUCGAGCUGGGCGAUCCGACGCCCAGUUGUCAAUCAAACGGA .....(((((..((((.(((((.(((.(((..............---)))))).))))-).))))..)..(.(.(((((((((......)))))))))).).......)))) ( -38.94) >DroSim_CAF1 12502 109 + 1 UCGCCUCUGGUUUCGUCGAAGUUUGGAGCCACAGGUGCAUUUCA---AGCCCAUACUUCCAACGAUUCAAGUCGAGCUGGGCGAUCCGACGCCCAGUUGUCAAUCAAGCGGA .(((((.((((((((........)))))))).))))).......---..........(((..((((....))))(((((((((......)))))))))...........))) ( -37.90) >DroEre_CAF1 10758 108 + 1 UCGCUUCUGGUUCCGCCGAAGCCUGGAGCCACAGGUGCACUUCA---AUCCCAUACUU-CAAAGUUUCGAGUUGAGUUGGGCGAUCUGACGCCCAGUUGUCAAUCAAGCGGA ((((((.((((((((........))))))))..((((((.((((---(..(...(((.-...)))...)..)))))(((((((......))))))).)))..))))))))). ( -32.30) >DroYak_CAF1 12649 98 + 1 UCGCUUCUGGU-------------GGAGCCACAGGUGCACUUCAACAAACCCAUACUU-CAAGGUUUCAAGUUGAGCUGGGUGAUCCGACGCCCAGUUGUCAAUCAAGCGGA ((((((....(-------------((((((..(((((................)))))-...))))))).(((((((((((((......))))))))..))))).)))))). ( -29.49) >DroAna_CAF1 9806 94 + 1 UUGGUUCGGCUUCCGGGGAAGCCUCCAGACACAGGUGCCUGUGC---CACUCAUA-----AGAAACCCAAG---AUCUGAGC-------CGCCCAGCUGUCCAUCAAUGGGA ..(((((((((((....))))))....(.(((((....))))).---).......-----...........---....))))-------).((((..((.....)).)))). ( -31.70) >consensus UCGCCUCUGGUUUCGUCGAAGUUUGGAGCCACAGGUGCAUUUCA___AGCCCAUACUU_CAACGAUUCAAGUUGAGCUGGGCGAUCCGACGCCCAGUUGUCAAUCAAGCGGA .(((((.((((((((........)))))))).))))).....................................(((((((((......))))))))).............. (-22.59 = -23.72 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006