| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,553,559 – 7,553,663 |
| Length | 104 |
| Max. P | 0.898712 |
| Location | 7,553,559 – 7,553,663 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 94.36 |
| Mean single sequence MFE | -38.17 |
| Consensus MFE | -34.22 |
| Energy contribution | -34.33 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7553559 104 + 23771897 ----UCGCUGGAGGGGAUUGGCGGAUCUGAGGGGAUCUGUUGAUCUGGUGAUUUGGGGAGCGGACCACAUUUGUCGCCAGCCCAAGCGAAAUCGAAAUUGAAAUUGAA ----(((((...((((((..((((((((....))))))))..)))(((((((.((((.......)).))...))))))).))).)))))..((((........)))). ( -40.70) >DroSim_CAF1 771 103 + 1 ----UCGCUGGAGGGGAUUGGCGGAUCUG-GGGGAUCUGGUGAUCUGGUGAUUUGGGGAGCGGACCACAUUUGUCGCUAGCCCAAGCGAAAUCGAAAUUGAAAUUGAA ----(((((...((((((((.((((((..-...)))))).)))))(((((((.((((.......)).))...))))))).))).)))))..((((........)))). ( -34.40) >DroYak_CAF1 786 107 + 1 CGGCUGGCUGGCGGGGAUUGGCGGAUCUG-GGGGAUCUGGUGAUCUGGUGAUUUGGGGAGCGGACCACAUUUGUCGCCAGCCCAAGCGAAAUCGAAAUUGAAAUUGAA ..((((((((((((((((((.((((((..-...)))))).)))))).(((.((((.....)))).))).....)))))))))..)))....((((........)))). ( -39.40) >consensus ____UCGCUGGAGGGGAUUGGCGGAUCUG_GGGGAUCUGGUGAUCUGGUGAUUUGGGGAGCGGACCACAUUUGUCGCCAGCCCAAGCGAAAUCGAAAUUGAAAUUGAA ....(((((...(((((((..(((((((....)))))))..))))(((((((.((((.......)).))...))))))).))).)))))..((((........)))). (-34.22 = -34.33 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:59 2006