Locus 2709

Sequence ID 3L_DroMel_CAF1
Location 7,547,499 – 7,547,589
Length 90
Max. P 0.901791
window4246

overview

Window 6

Location 7,547,499 – 7,547,589
Length 90
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 94.11
Mean single sequence MFE -20.82
Consensus MFE -17.70
Energy contribution -18.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.85
SVM decision value 1.02
SVM RNA-class probability 0.901791
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7547499 90 - 23771897
UUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20)
>DroPse_CAF1 11459 90 - 1
CCUGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20)
>DroGri_CAF1 11241 92 - 1
C---CGUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACACAGAAAAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCAAGUUU
.---((((((......))))))........((((.....))))....(((..((((((((....(((((....)))))....))))))))..))) ( -23.10)
>DroSec_CAF1 16936 90 - 1
UUAGUCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
...((.((((((((((............)))).))))))))(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -21.00)
>DroAna_CAF1 9137 90 - 1
UUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20)
>DroPer_CAF1 11551 90 - 1
CCUGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA-----AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
......((((((((((............)))).))))))..(-----(((((.(((((((....(((((....)))))....))))))))))))) ( -20.20)
>consensus
CUAGCCUUUUCAAUUUAAAAUGUAAAUCAAGUGUGAAAAACA_____AAAUCUGCAGCGAAAGUGUUGCAAUUGCAAUUUGCUCGUUGCGAUUUU
......((((((((((............)))).))))))........(((((.(((((((....(((((....)))))....)))))))))))). (-17.70 = -18.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006