Locus 2678

Sequence ID 3L_DroMel_CAF1
Location 7,461,555 – 7,461,675
Length 120
Max. P 0.517752
window4192

overview

Window 2

Location 7,461,555 – 7,461,675
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.11
Mean single sequence MFE -32.62
Consensus MFE -23.25
Energy contribution -24.38
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.517752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7461555 120 + 23771897
UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAAUUUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUUUGGGUUCCGGUAUAGUCGUAUUUGUGCUAUUUAUUCUUAAGCGCAG
.(((((((....))))))).....(((((((((((....(((((.......(((((..((((((.......))))))..)))))....)))))))))))))..((((....))))))).. ( -33.30)
>DroSim_CAF1 111706 110 + 1
UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAUUUUUGGCGACA---------AG-UCCAAAUUUCUUUCAUUUGGGUUCCGGUAUAGUCGUAUUUGUGCUAUUCAUUCUUAAGCGCAG
.(((((((....))))))).....(((((((((....((((.((.---------(.-.((((((.......))))))..)...))...))))...))))))((........))..))).. ( -25.60)
>DroEre_CAF1 117060 120 + 1
UGAGGUAAUAACUUACUUCGCGAAGCGGCACUCUUUUUGGCGACAAGUCCUUCGGGUGCCGAAUUUUAUCCAUCUGGGUUCCGGCAUAAUUGUAUUUGUGCUGUUCAUUCUCAAGCGCAG
.(((((((....)))))))(((...((((((((.....(((.....)))....)))))))).............((((...((((((((......))))))))......))))..))).. ( -37.30)
>DroYak_CAF1 110143 120 + 1
UGAGGUAAUAACAUACUUCGUCAAGCGGCACAAUGCUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUCUGGGUUCCGGCAUAAUCAUAUUUGUGCUGUUCAUUCUUAAGCGCAG
.((((((......)))))).....(((((((...(((((....))))).(....))))))........(((....)))...((((((((......)))))))).............)).. ( -34.30)
>consensus
UGAGGUAAUAACUUACUUCGUCAAGCGGCACAAUUUUUGGCGACAAGUCCUUCGGGUGCCAAAUUUUUUCCAUCUGGGUUCCGGCAUAAUCGUAUUUGUGCUAUUCAUUCUUAAGCGCAG
.(((((((....))))))).....(((((((....((((....))))........)))))...............((((..((((((((......))))))))...))))......)).. (-23.25 = -24.38 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006