| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,433,114 – 7,433,215 |
| Length | 101 |
| Max. P | 0.601442 |
| Location | 7,433,114 – 7,433,215 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.80 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -15.49 |
| Energy contribution | -15.13 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7433114 101 + 23771897 ---C----CGUGGAGUUCAUUACGGCAACAAGUGUCGAAAUGUGUCGA-AAUAUUGCAAAUAAAGUUGACACAUUUGCAUAU--GCCUAAUAAAAUUUU-CAUGC-----CCACACA ---.----.((((.((.....))((((....((((..(((((((((((-..(((.....)))...))))))))))))))).)--)))............-.....-----))))... ( -24.60) >DroVir_CAF1 96516 106 + 1 -ACUCUCACGUUGAGUUCAUUAUGGCAACAAGUGUCGAAAUGUGUCGA-AAUAUUGCAAAUAAAGUUGACACAUUUGCAUA----CCUAAUAAAAUUUUCCAUGC-----ACAUGUG -((((.......))))......((....)).((((..(((((((((((-..(((.....)))...)))))))))))((((.----................))))-----))))... ( -19.13) >DroWil_CAF1 105532 99 + 1 ---U----UGCCGAGUUCAUUAUGGCAACAAGUGUCGAAAUGUGUCGA-AAUAUUGCAAAUAAAGUUGACACAUUUGCAUA----CCUAAUAAAAUUUU-CAUGC-----ACACAUG ---(----(((((.(.....).))))))...((((..(((((((((((-..(((.....)))...)))))))))))((((.----..............-.))))-----))))... ( -21.89) >DroYak_CAF1 80809 106 + 1 ---C----UG-GGAGUUCAUUACGGCAACAAGUGUCGAAAUGUGUCGAAAAUAUUGCAAAUAAAGUUGACACAUUUGCAUAU--GCCUAAUAAAAUUUU-CAUACAUUUUCCGCACA ---.----((-..((((.((((.((((....((((..(((((((((((...(((.....)))...))))))))))))))).)--)))))))..))))..-))............... ( -24.20) >DroMoj_CAF1 90284 107 + 1 CGCUUGCACGCUGAGUUCAUUAUGGCAACAAGUGUCGAAAUGUGUCGA-AAUAUUGCAAAUAAAGUUGACACAUUUGCAUA----CCUAAUAAAAUUUUCCAUGC-----ACAUGCG (((.((((.(..(((((.....((....)).((((..(((((((((((-..(((.....)))...)))))))))))..)))----).......)))))..).)))-----)...))) ( -24.10) >DroAna_CAF1 84741 100 + 1 ---C----AU-GCCUUUCAUUAUGGCAACAAGUGUCGAAAUGUGUCGA-AAUGUUGCAAAUAAAAUUGACACAUUUGCAUAUAAGCCUAAUAAAAUUUU-UAUUG-----GC--AUG ---(----((-(((.........(((.....((((..(((((((((((-..(((.....)))...)))))))))))))))....))).(((((.....)-)))))-----))--))) ( -24.40) >consensus ___C____CG_GGAGUUCAUUAUGGCAACAAGUGUCGAAAUGUGUCGA_AAUAUUGCAAAUAAAGUUGACACAUUUGCAUA____CCUAAUAAAAUUUU_CAUGC_____ACACACG ......................(((((.....)))))(((((((((((...(((.....)))...)))))))))))......................................... (-15.49 = -15.13 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:58 2006