| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,415,165 – 7,415,271 |
| Length | 106 |
| Max. P | 0.643717 |
| Location | 7,415,165 – 7,415,271 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.69 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -19.71 |
| Energy contribution | -19.43 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7415165 106 + 23771897 AAUUAUUAACUUUUGUGCGGCUGCUGCCAUGGCGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUAC------GCCUGUAA----AUAUAUUUA---- (((((.((((...((..((((.(((.....)))))))..))...)))).)))))......(((((((((.....)).(((.........------))).))))----)))......---- ( -21.40) >DroVir_CAF1 74955 104 + 1 AAUUAUUAACUUUUAUGCGGCUGCUGCCAUGGCACCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUAC------GCUUGUAC----A--UUUUUU---- (((((.((((...(((((((.((((.....)))))))))))...)))).)))))...(((((.((((....)))).)))))........------........----.--......---- ( -20.50) >DroPse_CAF1 62041 116 + 1 AAUUAUUAACUUUUGUGCGGCUGCUGCCAUGGUGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUACUCGCACGCUUGCAU----UUACAUUGCAUAU ..............(((((((....)))..(((((((..(((((((...((((.....)))).....)))))))..)))))))........))))...((((.----......))))... ( -31.60) >DroMoj_CAF1 67660 100 + 1 AAUUAUUAACUUUUAUGCGGCUGCUGCCAUGGCGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUAC------A----UAU----A--UUUUUU---- (((((.((((...((((((((.(((.....)))))))))))...)))).)))))...(((((.((((....)))).)))))........------.----...----.--......---- ( -22.00) >DroAna_CAF1 66253 110 + 1 AAUUAUUAACUUUUGUGCGGCCGCUGCCAUGGCGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUAC------GUCUGUAAACAAAUAUAUUAA---- (((((.((((...((..((((.(((.....)))))))..))...)))).)))))...(((((.((((....)))).)))))..(((((.------.(.((....)).)..))))).---- ( -22.30) >DroPer_CAF1 62635 116 + 1 AAUUAUUAACUUUUGUGCGGCUGCUGCCAUGGUGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUACUCGCACGCUUGCAU----UUACAUUGCAUAU ..............(((((((....)))..(((((((..(((((((...((((.....)))).....)))))))..)))))))........))))...((((.----......))))... ( -31.60) >consensus AAUUAUUAACUUUUGUGCGGCUGCUGCCAUGGCGCCGUGUGUUUGUUAUUAAUUUCUUGUUAUUUAUGCAAAUAGUUGGCACUUAAUAC______GCUUGUAU____AUAUAUUUA____ (((((.((((...((..((((.(((.....)))))))..))...)))).)))))...(((((.((((....)))).)))))....................................... (-19.71 = -19.43 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:51 2006