Locus 2659

Sequence ID 3L_DroMel_CAF1
Location 7,375,224 – 7,375,341
Length 117
Max. P 0.906620
window4165

overview

Window 5

Location 7,375,224 – 7,375,341
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.07
Mean single sequence MFE -36.75
Consensus MFE -24.60
Energy contribution -23.17
Covariance contribution -1.44
Combinations/Pair 1.57
Mean z-score -1.54
Structure conservation index 0.67
SVM decision value 1.05
SVM RNA-class probability 0.906620
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7375224 117 + 23771897
UAAGAUUGGACCCUCUGCCACAACCAUUAAUUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCCAUAUCAUUCACCAUGGAACUGCCCUUCGGUGGUA---C
...((((((......((((.((...........)).))))...((((((((((.(((........))).)))))))))).))).)))....(((((.(((......))).))))).---. ( -36.20)
>DroEre_CAF1 21303 117 + 1
UAAGGUUGGGCCCUCUACCACAACUAUAAACUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCGAUUUCCUUCACCAUGGAACUGCCAUUCGGUGGUA---C
...(((((((.......)).)))))........(((((.(((.((((((((((.(((........))).))))))).))).)))..))..((((((((.....))))..)))))))---. ( -35.20)
>DroWil_CAF1 23620 117 + 1
UGAGAUUGGACCAUCGACCGAA---GUUUUGUAUGUGGCAGCUGGGGCCAGUGAUGAUUAUGCCUUCAAUGCUGGUUUCCCCAUAUCAUUCACCAUGGAAUUGCCACCGGGUGGUCAACA
........((((((((((....---)))......((((((..(((((((((((.(((........))).))))))...)))))....((((......))))))))))..))))))).... ( -37.60)
>DroYak_CAF1 19744 117 + 1
UACGGUUGGUCCCUCUACCACAACCAUCAAUUAUGCGGCAUCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUUCCGAUUUCCUUCACCAUGGAACUGCCAUUCGGAGGCA---C
...(((((............)))))...........((((..(((((((((((.(((........))).)))))))..))))..((((........)))).))))...........---. ( -33.70)
>DroMoj_CAF1 26696 117 + 1
CCAGGUGGGCUGCUCCACCCA---AUUGCUGUAUCCAGCUGCCGGUGCUAGCGAUGAUUAUGCCUUCAAUGCUGGGUUCCCCAUAUCAUUUACCAUGGAACUGCCCGCUGGCGGCGAUAA
...((((((....))))))..---.......((((..((((((((((((((((.(((........))).))))))(((((................)))))....)))))))))))))). ( -41.19)
>DroPer_CAF1 19192 114 + 1
CGAAAUCGGUUCGUCCACCA---ACGUUCUUUACGUGGCUGCUGGGGCCAGCGAUGAUUAUGCCUUCAAUGCAGGCUUCCCCAUAUCGUUCACCAUGGAACUGCCGCCCGGCGGCA---C
.......(((......))).---((((.....)))).((((((((((((.(((.(((........))).))).)))...........((((......)))).....))))))))).---. ( -36.60)
>consensus
UAAGAUUGGACCCUCUACCACA_CCAUUAAUUAUGCGGCAGCCGGAGCUAGCGAUGAUUAUGCCUUCAAUGCUGGCUUCCCCAUAUCAUUCACCAUGGAACUGCCAUCCGGUGGCA___C
......(((........))).................((.(((((((((((((.(((........))).)))))))....................((.....)).)))))).))..... (-24.60 = -23.17 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006