| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,373,321 – 7,373,419 |
| Length | 98 |
| Max. P | 0.709567 |
| Location | 7,373,321 – 7,373,419 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -27.19 |
| Consensus MFE | -16.70 |
| Energy contribution | -17.32 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7373321 98 + 23771897 UAGCUAUCGUAUUUUAAAU------GAUAUACUUUAACAAAUAACUAAUAAUUCACAGCGAUCUGCCCGAGAAUUGGGAGGAUCUGGAUGCGGUAGCCCGCACU ..((((((((((((....(------((......))).......................(((((.(((((...))))).))))).))))))))))))....... ( -24.80) >DroSec_CAF1 17304 99 + 1 UGGCUAUCGUAUUUAAAAUA-----UAUAUACUUUAGCAAGUAACUCAUAAUUCACAGCGAUCUGCCCGAGAAUUGGGAGGAUCUGGAUGCGGUAGCCCGCACU .((((((((((((((.....-----....(((((....)))))................(((((.(((((...))))).)))))))))))))))))))...... ( -32.50) >DroSim_CAF1 17861 98 + 1 UGGCUAUCGUAUUUUAAAU------UAUAUACUUUAACAAGUAACUAAUAACUCACAGCGAUCUGCCCGAGAAUUGGGAGGAUCUGGAUGCGGUAGCCCGCACU .(((((((((((((...((------((..(((((....)))))..))))..........(((((.(((((...))))).))))).)))))))))))))...... ( -31.00) >DroEre_CAF1 19473 98 + 1 UGGCUAUCAUAUACUAAAG------UAUUUACUCUGACAUAUAACUGACAUUUCACAGAGAUCUGCCCGAGGACUGGGAGGAUCUGGAUGCGGUAGCCCGCUCU .(((((((..((((....)------)))....(((.........(((........)))((((((.((((.....)))).)))))))))...)))))))...... ( -26.00) >DroYak_CAF1 17844 98 + 1 UGACUAUUACAUUUUAUAU------GAUUUACUCUGACAUAUAACAUACAUUUCACAGCGAUCUGCCGGAGAACUGGGAGGAUCUGGAUGCGGUUGCCCGCACU ...(((.......((((((------(.((......)))))))))...............(((((.((((....))))..)))))))).(((((....))))).. ( -20.50) >DroPer_CAF1 16965 98 + 1 -GGGUAUCGAAUUCUAGCCUCUUAUGGCCUAGUCUUAAAAGU---UG--AUCUUCCAGCGACUUGCCCGACACCUGGGAGGAUCUGGAUGCAGUGGCCCGGACU -((((.......((((((((((((.((....(((....((((---((--.........))))))....))).)))))))))..))))).......))))..... ( -28.34) >consensus UGGCUAUCGUAUUUUAAAU______GAUAUACUCUAACAAAUAACUAAUAAUUCACAGCGAUCUGCCCGAGAACUGGGAGGAUCUGGAUGCGGUAGCCCGCACU .(((((((((((((............((............)).................(((((.((((.....)))).))))).)))))))))))))...... (-16.70 = -17.32 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:38 2006