Locus 2633

Sequence ID 3L_DroMel_CAF1
Location 7,238,635 – 7,238,725
Length 90
Max. P 0.919333
window4133

overview

Window 3

Location 7,238,635 – 7,238,725
Length 90
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 86.84
Mean single sequence MFE -30.66
Consensus MFE -22.32
Energy contribution -22.72
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.73
SVM decision value 1.13
SVM RNA-class probability 0.919333
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7238635 90 + 23771897
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC-----------CCCGCACAUCCCCCUCU---------
....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------))))))...........--------- ( -30.00)
>DroSec_CAF1 20074 90 + 1
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC-----------CCCGCACUUCCCGCUCU---------
....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------))))))...........--------- ( -30.00)
>DroSim_CAF1 20126 99 + 1
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUGUGGGUCACUUUUC-----------CCCGCACUUCCCGCUCUCUCUCUCUC
....((((((((((((((......)))))))).)))...((((..((.((((((......)))))).))...)-----------)))))).................... ( -29.80)
>DroEre_CAF1 20694 90 + 1
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUGC-----------GCCGCAAAUCCCGCUAU---------
.(((((((((((((((((......)))))))).))).....(((((((((((((......)))))..))))).-----------)))))))))........--------- ( -31.50)
>DroYak_CAF1 21846 101 + 1
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCACAGGCCCAACUCUCUGGGUCACUUUCCCCGCCCCGCCCCCCGCAAAUCCCACUUC---------
.(((((((((((((((((......)))))))).)))...(((((....((((((......)))))).........))))).......))))))........--------- ( -32.02)
>consensus
AAUUUGCAUCAUGUCAUUAGGAUGAGUGGCAUCGAUAAUGGGGCCAGAGGCCCAACUCUCUGGGUCACUUUUC___________CCCGCACAUCCCGCUCU_________
....((((((((((((((......)))))))).)))....((.(((((((......))))))).)).....................))).................... (-22.32 = -22.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:08 2006