Locus 2629

Sequence ID 3L_DroMel_CAF1
Location 7,236,787 – 7,236,895
Length 108
Max. P 0.510046
window4128

overview

Window 8

Location 7,236,787 – 7,236,895
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.00
Mean single sequence MFE -19.33
Consensus MFE -13.59
Energy contribution -13.71
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.510046
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7236787 108 + 23771897
CACACAACUUCCCU-UCAUAUA-CAUAUAUACAUAUAUAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------AUACAAAAACUGGCUUAC
..(((((((..((.-.(((((.-..(((((....)))))...)))))((((....))))..))...)))))))(((((..............----------..........)))))... ( -21.16)
>DroSec_CAF1 18312 98 + 1
CACACAACUUCCCU-UCAUAU-----AUA------UACAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------AUACAAAAACUGGCUUAC
........(((((.-((....-----...------......))...)))))((((..(((((((...)))))))..))))............----------.................. ( -17.22)
>DroSim_CAF1 18315 102 + 1
CACACAACUUCCCU-UCAUAUA-CAUAUA------UACAGAGAUAUGGGAAUCUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA----------ACACAAAAACUGGCUUAC
..(((((((..((.-.......-(((((.------.......)))))((((....))))..))...)))))))(((((..............----------..........)))))... ( -18.06)
>DroEre_CAF1 18827 96 + 1
CACACAACUUCCUCUG-------CAUAUA------UAUAGCGAUAUGGGAAUGUAUUCCACGGCAUGGUUGUGGGCAACAAAAUAAAUAAA-----------AUACAAAAACUGGCUUAC
..(((((((.((....-------(((((.------.......)))))((((....))))..))...)))))))(....)............-----------.................. ( -17.00)
>DroYak_CAF1 19911 114 + 1
CACACAACUUCCUCGCCAUAUCUCAUAUA------UAUAGAGAUAUGGGAAUGUAUUCCACGGCAUCGUUGUGGGCAACAAAAUAAAUAAAAAUACAAAAAAAAACAAAAACUGGCUUAC
..........((((.(((((((((.....------....))))))))))).(((..((((((((...))))))))..))).................................))..... ( -23.20)
>consensus
CACACAACUUCCCU_UCAUAU__CAUAUA______UAUAGAGAUAUGGGAAUGUAUUCCGCGGCAUGGUUGUGGGCUACAAAAUAAAUAAAA__________AUACAAAAACUGGCUUAC
........(((((.................................)))))((((.((((((((...)))))))).))))........................................ (-13.59 = -13.71 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:03 2006