Locus 2617

Sequence ID 3L_DroMel_CAF1
Location 7,230,736 – 7,230,836
Length 100
Max. P 0.793016
window4100

overview

Window 0

Location 7,230,736 – 7,230,836
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.94
Mean single sequence MFE -30.90
Consensus MFE -20.81
Energy contribution -20.77
Covariance contribution -0.04
Combinations/Pair 1.05
Mean z-score -1.42
Structure conservation index 0.67
SVM decision value 0.59
SVM RNA-class probability 0.793016
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7230736 100 + 23771897
GCCCGCUCAUGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGGUAAUGCCAAU------GGCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG--------------GGCAUUGGGCGAUG
((((((.(..(((....)))...(((((((....((((.......))))...------.....(....)...........)))))))).)))--------------)))........... ( -33.80)
>DroSec_CAF1 12456 79 + 1
GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCA------AAGGC---------------------AAAUUAAUUAUGGCCAAGUGCG--------------GGCACUGGGCGAUG
..(((((((.((.(((..((..((((((((.....((.------...))---------------------..........)))))))).)).--------------)))))))))))).. ( -27.36)
>DroSim_CAF1 12355 85 + 1
GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGGCAAAGGC---------------------AAAUUAAUUAUGGCCAAGUGCG--------------GGCACUGGGCGAUG
..(((((((.((.(((..((..((((((((...........((....))---------------------..........)))))))).)).--------------)))))))))))).. ( -29.00)
>DroEre_CAF1 12693 87 + 1
GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAA-AG------------------------GCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG--------GCAUGGGGCAUUGGGCGAUG
..(((((((.(((.(((.(((.((((((((.(-(.------------------------....(....)........)).))))))))...)--------)).))))))..))))))).. ( -28.42)
>DroYak_CAF1 13611 119 + 1
GCUCGCUCACGUCGUCAGGCAUUUUGGCCAAA-AGGCGAAGGCAACGGCACUGGACAAGGCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCGAGCAUUGGGCAUUGGGCAUUGGGCGAUG
..(((((((.(((.....((((((.(((((..-..((....))....((.((.....))))...................)))))))))))..((.....))....)))..))))))).. ( -35.90)
>consensus
GCUCGCUCACGUCGUCAGGCUUUUUGGCCAAAAAGGCAAAGG_AAAGGC__________GCAAGGGAACGAAAUUAAUUAUGGCCAAGUGCG______________GGCAUUGGGCGAUG
..(((((((.(((....)))...(((((((..................................................)))))))((((................))))))))))).. (-20.81 = -20.77 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:37 2006