| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,228,202 – 7,228,321 |
| Length | 119 |
| Max. P | 0.999937 |
| Location | 7,228,202 – 7,228,321 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.82 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -27.54 |
| Energy contribution | -27.54 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.93 |
| SVM decision value | 4.67 |
| SVM RNA-class probability | 0.999937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7228202 119 - 23771897 CCCGUCGCCGCCGCAA-AAGGAAAAGGCUUUAAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGGAAAUCCGACGCAUGGGAGUUGCAA ......(((.((....-..))....(((((......))))).))).........(((..((((....(((((((..........))))))).((((....)).))...))))..)))... ( -30.00) >DroSec_CAF1 9928 113 - 1 ------GGCCCCGCAA-AAGGAAAAGGCUUUAAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGGAAAUCCGACGCAUGGGAGUUGCAA ------((((((....-..))....(((((......))))).))))........(((..((((....(((((((..........))))))).((((....)).))...))))..)))... ( -32.60) >DroSim_CAF1 9841 113 - 1 ------GCCGUCGCAA-AAGGAAAAGGCUUUAAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGGAAAUCCGACGCAUGGGAGUUGCAA ------......((((-.(((....(((((......)))))...)))............((((....(((((((..........))))))).((((....)).))...))))..)))).. ( -28.30) >DroEre_CAF1 9945 113 - 1 ------AGCGCCGCAA-AAGGAGAAGGCUUUAAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGGAAAUCCGACGCAUGGGAGUUGCAA ------......((((-.(((....(((((......)))))...)))............((((....(((((((..........))))))).((((....)).))...))))..)))).. ( -28.30) >DroYak_CAF1 10890 114 - 1 ------AGCGCCGCAAAAAGGAAAAGGCUUUGAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGAAAAUCCGACGCAUGGGAGUUGCAA ------.((.((.......))...((((((.(((....))))))))).........(((((((....(((((((..........))))))).(((.........))).)))).))))).. ( -29.20) >consensus ______GGCGCCGCAA_AAGGAAAAGGCUUUAAUAUAAGUCAGGCCUAACAAAACAAACCCCAAAAACCGCAUAAACAAAUCAAUGUGCGGAGUGGAAAUCCGACGCAUGGGAGUUGCAA ............((....(((....(((((......)))))...))).........(((((((....(((((((..........))))))).(((.........))).)))).))))).. (-27.54 = -27.54 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006