Locus 259

Sequence ID 3L_DroMel_CAF1
Location 721,597 – 721,717
Length 120
Max. P 0.932051
window388

overview

Window 8

Location 721,597 – 721,717
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.17
Mean single sequence MFE -42.62
Consensus MFE -25.59
Energy contribution -26.07
Covariance contribution 0.48
Combinations/Pair 1.34
Mean z-score -2.66
Structure conservation index 0.60
SVM decision value 1.22
SVM RNA-class probability 0.932051
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 721597 120 + 23771897
UUGGCCCUGAAGAAGACAUUCUGGAAGGGCGUCAUUUGCUUCAUCAGCGGCAGAAAGCUGAUCAGGUAGUUGUAGUCGGAGUCGCCCACAUGGAGGACACUCUUGCACCUGGCCAGAUCC
((((((....((((....))))((..(((((.(..((((((.((((((........)))))).))))))(((....))).).)))))....((((....))))....)).)))))).... ( -39.00)
>DroVir_CAF1 94194 120 + 1
UUGGCGCGAAAGGCAACAUUCUGGAGCGGCGACAUUUGCUUCAUCAGCGGCAAGAAACUGAUGAGGAAAUUGUAGUCCGAGUCGCCCACGUGCAGGAUGUUCUUGCAGCGCGCCAAGUCC
((((((((..(((.(((((((((..((((((((.......(((((((..........)))))))(((........)))..))))))...)).))))))))))))....)))))))).... ( -49.60)
>DroGri_CAF1 105334 120 + 1
UUGGCGCGAAAUGCAACAUUCUGCAGCGAUGACAUUUGCUUCAUCAUCGGCAAGAAACUGAUGAGAAAAUUGUAAUCCGAAUCGCCCACAUGCAGUAUAUUCUUGCAACGUGCCAAAUCC
((((((((...(((((....((((((((((.....(((((((.(((((((.......))))))))))....)))).....))))).....))))).......))))).)))))))).... ( -38.30)
>DroWil_CAF1 70905 120 + 1
UUGGCGCGAAAGAAAACAUUUUGGAGUGGCGACAUUUGCUUCAUAAGUGGCAAAAAGCUGAUUAGAUAAUUGUAAUCAGAGUCACCCACAUGCAAUACAUUUUUGCAACGUGCCAAAUCU
((((((((.............(((.(((((....((((((........))))))...(((((((.(....).))))))).))))))))..(((((.......))))).)))))))).... ( -40.60)
>DroMoj_CAF1 91721 120 + 1
UUGGCCCGAAAGGUAAUGUUCUGCAACGGCGACAUUUGCUUCAUCAGCGGCAAAAAGCUGAUGAGGAAAUUGUAAUCGGAGUCGCCCACGUGCAGGAUGUUCUUGCAGCGCGCCAAAUCC
(((((.((..(((.(((((((((((..((((((.....((((((((((........))))))))))...(((....))).))))))....))))))))))))))....)).))))).... ( -50.60)
>DroAna_CAF1 81914 120 + 1
UUGGCCCGAAAGUAGACGUUUUGGAUGGGCGUCAUCUGCUUCAUAAGGGGCAGGAAGCUGAUCAGGUAGUUGUAGUCGGAAUCGCCCACAUGGAGUACGUUCUUGGACCUGGCCAGAUCC
(((((((....)..((((((..(..(((((.....(((((((....)))))))((..(((((.(.(....).).)))))..)))))))..)..)..))))).........)))))).... ( -37.60)
>consensus
UUGGCCCGAAAGGAAACAUUCUGGAGCGGCGACAUUUGCUUCAUCAGCGGCAAAAAGCUGAUGAGGAAAUUGUAAUCGGAGUCGCCCACAUGCAGGACAUUCUUGCAACGCGCCAAAUCC
((((((((...................((((((.((((((........))))))...(((((.(.(....).).))))).))))))....(((((.......))))).)))))))).... (-25.59 = -26.07 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:41 2006