Locus 2588

Sequence ID 3L_DroMel_CAF1
Location 7,199,754 – 7,199,872
Length 118
Max. P 0.679382
window4034

overview

Window 4

Location 7,199,754 – 7,199,872
Length 118
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -32.53
Consensus MFE -32.37
Energy contribution -32.37
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.99
SVM decision value 0.30
SVM RNA-class probability 0.679382
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7199754 118 - 23771897
--AGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACGGC
--.((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...(((((((........))))).))........)))) ( -32.60)
>DroEre_CAF1 13649 120 - 1
GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA
..(((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).)))))........... ( -32.50)
>DroYak_CAF1 10786 120 - 1
GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA
..(((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).)))))........... ( -32.50)
>consensus
GGUGCUGGUUGCUUGUUAAAAGUUCAUUAAACUCAUAGAAUGCUUGUAAAGCGAGAUGAUAAAUUAAUCUACAGCAGGCAACGAAGCGCGCUAUUGAGUGGGCGCAGCGAAAGGGACAGA
...((((((((((((((....((..(((((..((((....((((.....))))..))))....)))))..))))))))))))...((.((((....)))).)).))))............ (-32.37 = -32.37 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:37 2006