Locus 2581

Sequence ID 3L_DroMel_CAF1
Location 7,195,563 – 7,195,683
Length 120
Max. P 0.967986
window4022

overview

Window 2

Location 7,195,563 – 7,195,683
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.67
Mean single sequence MFE -35.44
Consensus MFE -34.32
Energy contribution -34.00
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.97
SVM decision value 1.62
SVM RNA-class probability 0.967986
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7195563 120 - 23771897
UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAAUGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -36.20)
>DroSec_CAF1 9146 120 - 1
UUGGAUUUGGUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUUGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -33.10)
>DroSim_CAF1 1068 120 - 1
UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((..(((((((...((((...((((..((....))..))))))))(....)........))))))))))((((((.....)))))).......)))))))(....).. ( -36.20)
>DroEre_CAF1 9159 119 - 1
UUGGAUUUGAUGGCAGUCAGCAAAUUGGCA-ACGCACUGCGGAAUCGUGGUGCUGGUGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((.((((.((....(...-.)((((..((....))..)))))).))))..(((..(...)..))).)))((((((.....)))))).......)))))))(....).. ( -36.30)
>DroYak_CAF1 6476 120 - 1
UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGGUGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((..(((((((.((.((....((((..((....))..))))...((....)))).))..))))))))))((((((.....)))))).......)))))))(....).. ( -35.40)
>consensus
UUGGAUUUGAUGGCAGUCAGCAAAUUGGCAAACGCACUGCGGAAUCGUGGUGCUGUCGGCGACAGUGAAAAUUGCUGAGCCAAAAUGGAUAUCGUUUUAAUUUUUUCAAAUUGGGGACUC
...(((((((.(((..(((((((.((.((....((((..((....))..))))....(....).)).))..))))))))))((((((.....)))))).......)))))))(....).. (-34.32 = -34.00 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:25 2006