Locus 2569

Sequence ID 3L_DroMel_CAF1
Location 7,187,370 – 7,187,472
Length 102
Max. P 0.863457
window3982

overview

Window 2

Location 7,187,370 – 7,187,472
Length 102
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 72.65
Mean single sequence MFE -19.25
Consensus MFE -15.23
Energy contribution -14.85
Covariance contribution -0.38
Combinations/Pair 1.16
Mean z-score -1.30
Structure conservation index 0.79
SVM decision value 0.84
SVM RNA-class probability 0.863457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7187370 102 - 23771897
AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUCGGCAGGCGCUUCCACCCUCCCCACCAAAAAAAA------
..........(((....)))........((((((((((..((((......))))..)))))))......((.(((.(......)))).))))).........------ ( -20.60)
>DroSim_CAF1 50865 102 - 1
AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUCUGCAGGCGCCGCGCCCCCCACCCCCCCGAAAAA------
...((((...(((....)))..........((((((((..((((......))))..)))))))).....))))((((...))))..................------ ( -23.70)
>DroWil_CAF1 106394 89 - 1
AAAUGCAACAGCAAUUAUGCAAUAAUUUGUGGGUAGCAAAUGAAUAGAGAUUUAUAUGCCAUC---CUU-----------UCCCCUUCC----C-CAAAUACACACAC
...(((....))).....((((....))))((((.(((.((((((....)))))).))).)))---)..-----------.........----.-............. ( -13.90)
>DroYak_CAF1 54531 85 - 1
AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCCCCCUC----------------CUCCCCACC-CAAAAAA------
...(((....))).....((((....))))((((((((..((((......))))..)))))))).....----------------.........-.......------ ( -18.80)
>consensus
AAAUGCAACAGCAAUUAUGCAAUCAUUUGUGGCCGGCAAAUGAAAAGAGAUUUACAUGCUGGCUUCCUC___________CCCCCCUCCCCACC_CAAAAAA______
...(((....))).....((((....))))((((((((..((((......))))..))))))))............................................ (-15.23 = -14.85 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:49 2006