Locus 2555

Sequence ID 3L_DroMel_CAF1
Location 7,151,595 – 7,151,688
Length 93
Max. P 0.823468
window3965

overview

Window 5

Location 7,151,595 – 7,151,688
Length 93
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 73.84
Mean single sequence MFE -20.36
Consensus MFE -15.25
Energy contribution -15.58
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -0.98
Structure conservation index 0.75
SVM decision value 0.69
SVM RNA-class probability 0.823468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7151595 93 + 23771897
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCUCGAGGCGUCUGCC-------CCCCAUCCACC-----AUCCACCAUCUACCAC-CGCACC
.((((((((((((((((...))).)))))).)))))))....((((....))))......-------...........-----................-...... ( -17.60)
>DroVir_CAF1 22224 96 + 1
UUUGAGUGUUACGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACU-------UCAGCUCCGGCUCCUCGCUGAGCCCCGUCAUUGACU---
.(((.((((.(((......))))))).)))(((.........((((....))))......-------...((((.(((.....)))))))........)))..--- ( -21.40)
>DroGri_CAF1 24182 96 + 1
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCAUCUGCU-------CCAGCUCCAGUUCCUCGCUGAGCCUCAAUAUUGCCC---
.((((((((((((((((...))).)))))).)))))))............((((......-------...((((.(((.....)))))))........)))).--- ( -23.03)
>DroSim_CAF1 12763 93 + 1
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCUCGAGGCGUCUGCC-------CCCCAUCCACC-----AUCCAGCACCUACCAC-CGCACC
.((((((((((((((((...))).)))))).)))))))....((((....))))......-------...........-----.....((.........-.))... ( -17.90)
>DroWil_CAF1 62750 90 + 1
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACUGC----UCCACAUCC--------UUCCAU--CCUUCCAU-C-CAUC
.((((((((((((((((...))).)))))).)))))))....((((....))))........----.........--------......--........-.-.... ( -16.90)
>DroAna_CAF1 16804 95 + 1
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACAGGGAGGUCCUUUUCC--C-----C-UCUGCCUCUCCCUC-CGCA--
.((((((((((((((((...))).)))))).)))))))....((((....)))).....(((((((..(......--.-----.-...)..))))))).-....-- ( -25.30)
>consensus
UUUGAGUGUUGCGUUACCUCGUGCGCGCAAUCAUUUAAUUUCCGCCCCAAGGCGUCUACU_______CCACAUCCA_C_____AUCCAGCCCCUACCAC_CGCA__
.((((((((((((((((...))).)))))).)))))))....((((....)))).................................................... (-15.25 = -15.58 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:33 2006