| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,142,098 – 7,142,212 |
| Length | 114 |
| Max. P | 0.599223 |
| Location | 7,142,098 – 7,142,212 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.93 |
| Mean single sequence MFE | -36.47 |
| Consensus MFE | -26.57 |
| Energy contribution | -26.60 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7142098 114 - 23771897 CCGUGGACGCAAAUGUGGAGCGCAAUCGCCACAUUAUGCUGCAUUGCCAGGCACAGGGUGUUCCCACACCCAGCAUAGUGUGGAAGAAGGCUACAGGUUAGACA-CUGCAAAUUA----- ..(..(...(.(((.((.(((.(.....((((((((((((((........))...((((((....)))))))))))))))))).....)))).)).))).)...-)..)......----- ( -39.70) >DroVir_CAF1 13601 105 - 1 CCGCCGAUGCAAAUGUGGAACGCAAUCGUCACAUCAUGUUGCAUUGUCAGGCACAGGGCGUGCCGACGCCCAGCAUUGUGUGGAAAAAGGCGACAGGUCAGAAA-U-------------- ((((((((((...((((....(((((.((.((.....)).)))))))....))))((((((....)))))).)))))).)))).....(((.....))).....-.-------------- ( -36.00) >DroGri_CAF1 15572 108 - 1 CUGCCGACGCGAAUGUGGAGCGCAACCGUCACAUAAUGUUGCAUUGUCAGGCGCAGGGAGUGCCCACGCCCAGCAUUGUAUGGAAAAAGGCUACAGGUUAGAUA-UACU----------- ..((((.(((.........))))..((((...(((((((((........((((..(((....))).))))))))))))))))).....))).............-....----------- ( -28.20) >DroWil_CAF1 50872 110 - 1 CGGCCGAUGCGAAUGUCGAACGGAAUCGCCACAUAAUGUUGCAUUGUCAGGCGCAGGGCGUGCCCACGCCCAGCAUUGUGUGGAAAAAGGCAACGGGUAGGUUUAAUAUC---------- ((..((((......))))..))(((((.((((((((((((((........))...((((((....)))))))))))))))))).....(....).....)))))......---------- ( -39.70) >DroMoj_CAF1 15090 119 - 1 CAGCCGACGCGAAUGUGGAGCGCAAUCGUCACAUAAUGCUGCACUGCCAGGCGCAGGGCGUGCCCACGCCCAGUAUCGUGUGGAAGAAGGCAACAGGUCAGAUA-UGUCAAUUCGAUUGA ..(((..(((((.((((...)))).))))((((..(((((((.((....)).)).((((((....)))))))))))..))))...)..)))....((((..((.-.....))..)))).. ( -38.70) >DroAna_CAF1 7632 113 - 1 CCGUUGAUGCGAAUGUGGAGCGCAACCGCCACAUAAUGUUGCACUGCCAGGCUCAGGGUGUACCCACGCCCAGUAUAGUGUGGAAAAAGGCCACAGGUAAGCCG-AGCACUA-CA----- ..((.(.(((((.((((..(((....)))..))))...))))).(((..((((..((((((....))))))..(((..(((((.......))))).))))))).-.)))).)-).----- ( -36.50) >consensus CCGCCGACGCGAAUGUGGAGCGCAAUCGCCACAUAAUGUUGCAUUGCCAGGCGCAGGGCGUGCCCACGCCCAGCAUUGUGUGGAAAAAGGCAACAGGUAAGAUA_UGCC___________ ..(((...((((.(((.....))).))))(((((.(((((((........))...((((((....))))))))))).)))))......)))............................. (-26.57 = -26.60 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006