| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 7,132,692 – 7,132,791 |
| Length | 99 |
| Max. P | 0.658007 |
| Location | 7,132,692 – 7,132,791 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Mean single sequence MFE | -31.56 |
| Consensus MFE | -22.16 |
| Energy contribution | -23.27 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 7132692 99 - 23771897 UGAA--------------UAUUGAAUAAUACUGAAUGAAGCCA-GAUACUCACACUGAAAUCCGAACGGGCAGAGCCAGGGGUAGUGCUCGAGAUCGUCGGGAAUCGGUGUAGG ....--------------............(((........))-)...((.(((((((..(((((.((((((..(((...)))..))))))......)))))..))))))))). ( -27.50) >DroSec_CAF1 47458 113 - 1 UUAAUAUUGGAUAAUGGAUAUUGGAUAAUACUGAAUGAAGCCA-GAUACUCACAAUGAAAUCCGAACGGGCAGAGCCAGGGGCAGUGCUCGAGAUCGUCGGGAAUCGGUGUAGG ....((((.((((.....)))).))))...(((........))-)...((.(((.(((..(((((.((((((..(((...)))..))))))......)))))..))).))))). ( -26.30) >DroSim_CAF1 47850 113 - 1 UGGAUAUUUGAUAAUGGAUAUUGGAUAAUACUGAAUGAAGCCA-GAUACUCACACUGAAAUCCGAACGGGCAGAGCCAGGGGCAGUGCUCGAGAUCGUCGGGUAUCGGUGUAGG ....((((..(((.....)))..))))...(((........))-)...((.(((((((.((((((.((((((..(((...)))..))))))......)))))).))))))))). ( -36.00) >DroEre_CAF1 47739 106 - 1 UGGA-------UAAUGGAUAUUUGGUAAUAUUGAAUGCAGCCA-GAUACUCACACUGAAAUCCGAACGGGCAGAGCCAACGGCAAUGCUCGGGAUCGUCGGGAAUCGGUGUAGG ....-------....(..((((((((.............))))-))))..)(((((((..(((((.((((((..(((...)))..))))))......)))))..)))))))... ( -36.72) >DroYak_CAF1 49576 106 - 1 UGAG-------UAAUGGAUAGUGGAUAAUACUGAAUGCAGCCA-GAUACUCACACGGAAAUCCGAACGGGCAGAGCCAGGGGCAAUGCUCGGGAUCGUCGGGAAUCGGUGUAGG .(((-------((.(((.(((((.....))))).......)))-..)))))((((.((..(((((.((((((..(((...)))..))))))......)))))..)).))))... ( -35.40) >DroAna_CAF1 50837 94 - 1 AU----------AAU----------CAAUACUGAAUCAAGCCAGGAUACUCACACGGCAAUCCUUACGGGCAGAGCCAGGGGUAGAGCUCCGCUGCGUCGGGAAUCGGUGUAGG ..----------...----------..(((((((.....(((.............)))..((((.((((((.(((((.......).)))).))).))).)))).)))))))... ( -27.42) >consensus UGAA_______UAAUGGAUAUUGGAUAAUACUGAAUGAAGCCA_GAUACUCACACUGAAAUCCGAACGGGCAGAGCCAGGGGCAGUGCUCGAGAUCGUCGGGAAUCGGUGUAGG ................................................((.(((((((..(((((.((((((..(((...)))..))))))......)))))..))))))))). (-22.16 = -23.27 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:23 2006