Locus 2535

Sequence ID 3L_DroMel_CAF1
Location 7,113,724 – 7,113,844
Length 120
Max. P 0.547599
window3938

overview

Window 8

Location 7,113,724 – 7,113,844
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.89
Mean single sequence MFE -44.17
Consensus MFE -20.50
Energy contribution -21.03
Covariance contribution 0.53
Combinations/Pair 1.25
Mean z-score -1.86
Structure conservation index 0.46
SVM decision value 0.03
SVM RNA-class probability 0.547599
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7113724 120 - 23771897
CACUCGGAGUAGACCAUAGUUUCCGGACAGAAUGGACUCCAUCACGGACUCCGUAUGAGGGCUCAGCAAGCCGGCGUGAUCGAUGGCCGCCAGUGAGAGGUAACUGGCCAAGUUUCGCGA
..((((((((...((((.(((....)))...)))))))))...((((...))))..)))((((.....))))..(((((....((((((((.......)))....)))))....))))). ( -37.50)
>DroVir_CAF1 59791 120 - 1
CACGCGCAGCAGGCCAUAGUUGCCGGAGAGUAUGGAAUCCAUGAUGGGAUCCAUGAAGUCUAUCAGCAAAUAGGCAUAGUCGAUGGCGGCCAGGGACAAGUAGCUGGCUAGAUUUCGUGA
(((((.((((..(((...(((((((..((.((((((.(((.....))).))))))..((((((......))))))....))..)))))))...)).).....))))))..(....)))). ( -38.50)
>DroGri_CAF1 59411 120 - 1
AACACGCAGUAGGCCAUAGUUGCCGGAGAGUAUGGAUUCCAUGAUGGGUUCCAUGAUAUCUAUCAACAGGUAGGCAUAAUCAAUGGCCGCCAGGGAGAGAUAGCUGGCCAGAUUGCGCGA
..(.((((((.((((((.(.(((((((...((((((..((.....))..))))))...)))(((....))).))))....).))))))(((((..........)))))...)))))).). ( -44.60)
>DroWil_CAF1 33867 120 - 1
CACACGCAACAGACCGUAGUUCCCAGUGAGUAUGGACUCCAUAAUCGAGUCCACAUGUGGACUCAACAAAUAGGCAUAGUCGAUGGCUGCCAGCGACAAAUAGCUGGCCAAAUUACGUGA
..(((((....(((..(.(((......((.(((((...))))).))(((((((....)))))))........))))..)))....)).((((((........))))))........))). ( -38.40)
>DroMoj_CAF1 55553 120 - 1
CACGCGCAGCAGGCCGUAGUUACCCGCUAGAAUGGAGUCCAUGAUGGGCUCCAUGAUGUCUAUCAGCAAGUAGGCGUAGUCAAUGGCAGCCAGGGACAGAUAGCUGGCCAGGUUGCGGGA
..(.((((((.((((((....))..((((..(((((((((.....))))))))).((((((((......)))))))).(((..(((...)))..)))...)))).))))..)))))).). ( -50.30)
>DroAna_CAF1 33069 120 - 1
CACCCGCAGCAGACCGUAGUUGCCAGAGAGGAUGGAGUCCAUCACUGCUUCCGUGUGGGGGCUCAGGAGGCAGGCGUGGUCGAUGGCAGCCAGGGAGAGGUAGCUGGCCAGGUUGCGGGA
..((((((((...((.(.(((((((..((.(((((...))))).((((((((..((....))...))))))))......))..))))))).).))...(((.....)))..)))))))). ( -55.70)
>consensus
CACACGCAGCAGACCAUAGUUGCCGGAGAGUAUGGACUCCAUGAUGGGCUCCAUGAGGGCUAUCAGCAAGUAGGCAUAGUCGAUGGCAGCCAGGGACAGAUAGCUGGCCAGAUUGCGCGA
..(.((((((.(.((((..............(((((.(((.....))).)))))..................(((...))).))))).(((((..........)))))...)))))).). (-20.50 = -21.03 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:06 2006