Locus 2530

Sequence ID 3L_DroMel_CAF1
Location 7,097,530 – 7,097,622
Length 92
Max. P 0.508566
window3933

overview

Window 3

Location 7,097,530 – 7,097,622
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -27.85
Consensus MFE -17.36
Energy contribution -16.45
Covariance contribution -0.91
Combinations/Pair 1.20
Mean z-score -1.39
Structure conservation index 0.62
SVM decision value -0.05
SVM RNA-class probability 0.508566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7097530 92 - 23771897
-CGAAGCUAA------UCUGUUGGUUUUUCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAGGGAAAACUUUGUUAACUCCACUGCCCUGCCCCAG
-.........------.(((.(((((((((((....)))))))))))((((((((((...(((((((....)))))))....))))).)))))...))) ( -32.90)
>DroPse_CAF1 59923 97 - 1
CCCUAACUAAAAUGCGUGUGUUG--UUUUCAGUUACUUGGAGAACCACAAGGAGUGGUUCGAUAAGGAGAACUACGUGCAUCAUCCCACCGUACACCAG
...............(..(((.(--(((((.....((((..(((((((.....)))))))..)))))))))).)))..).................... ( -24.60)
>DroSim_CAF1 12617 92 - 1
-CUAAGCUAA------UCUGUUGGUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAGGGAGAACUAUGUUAACUCCACUGCCCUGCCCCAG
-.........------.(((.(((((((.(((....))).)))))))((((((((((...((((.((....)).))))....))))).)))))...))) ( -28.30)
>DroEre_CAF1 12648 92 - 1
-UCGAGCUAA------UCUCUUGGCUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAAGGAUAACUAUGUGAACUCCACUGCCCUGCCUCAG
-..(((....------((((((((((....)))))...)))))....(((((((((((((.(((((.....)).))))))..))))).))))).))).. ( -29.70)
>DroYak_CAF1 12998 92 - 1
-CCAAGCUAA------UCUGUUGCUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGAUAAGGAUAACUAUGUGAACUCCACUGCGCUGCCCCAG
-..((((...------......))))..(((((..((((..(((((((.....)))))))..)))).........(((.....)))...)))))..... ( -27.00)
>DroPer_CAF1 61515 97 - 1
CCCAAACUAAAAUGCGUGUGUUG--UUUUCAGUUACUUGGAGAACCACAAGGAGUGGUUCGAUAAGGAGAACUACGUGCAUCAUCCCACCGUACACCAG
...............(..(((.(--(((((.....((((..(((((((.....)))))))..)))))))))).)))..).................... ( -24.60)
>consensus
_CCAAGCUAA______UCUGUUGGUUUUGCAGCUACUUGGAGAACCACAGGGAGUGGUUCGACAAGGAGAACUAUGUGAACUCCACUGCCCUGCCCCAG
....((((......................)))).((((..(((((((.....)))))))..))))................................. (-17.36 = -16.45 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:01 2006