Locus 253

Sequence ID 3L_DroMel_CAF1
Location 699,561 – 699,653
Length 92
Max. P 0.965758
window379

overview

Window 9

Location 699,561 – 699,653
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.84
Mean single sequence MFE -33.91
Consensus MFE -25.09
Energy contribution -26.09
Covariance contribution 1.00
Combinations/Pair 1.17
Mean z-score -2.91
Structure conservation index 0.74
SVM decision value 1.59
SVM RNA-class probability 0.965758
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 699561 92 - 23771897
------ACUAGCGUCCUUGGGGUAGAAGAAGACAGAGAGCUGCCGUCAGGGACAACCUGCCGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU
------....(((((((((((((((..............))))).))))))))....(((....))).-.))(((((((((.....))))))))).... ( -37.64)
>DroSec_CAF1 55191 85 - 1
------ACUAGCGUCCUUGGGGUAAAGGAAGACAGAGAGCUGCCGCCAGGGAC-------UGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU
------.(((..((((((((((((................)))).))))))))-------..)))...-...(((((((((.....))))))))).... ( -31.79)
>DroSim_CAF1 55477 85 - 1
------ACUAGCGUCCUUGGGGUAGAAGAAGACAUGAAGCUGCCGUCAGGGAC-------UGUGGCAA-AGCGGCAACCUCAAUUAGGGGUUGUCAUCU
------.(((..(((((((((((((....(....)....))))).))))))))-------..)))...-...(((((((((.....))))))))).... ( -32.10)
>DroEre_CAF1 57278 86 - 1
------GCUAGCGUCCUUGGGGUAGAAGAAGAUGGAGAGCUGCCGACAGGGAC-------UGUGGCAAAAGCGGCAACCUCAAUUAGGGGUUGUCAUCU
------((((..(((((((.(((((..............)))))..)))))))-------..))))......(((((((((.....))))))))).... ( -35.44)
>DroYak_CAF1 59249 86 - 1
------GCUAGCGUCCUUGGGGUAGAAGAAGAUGGAGAGCCGUCGACAGGGAC-------UGUGGCAAGAGCGGCGACCUCAAUUAGGGGUUGUCAUCU
------((((..(((((((...........(((((....)))))..)))))))-------..)))).(((..(((((((((.....))))))))).))) ( -34.12)
>DroAna_CAF1 56933 80 - 1
UGUCUGAACGGUGUCCUUGGCUUAAACAGAG----------GCAGCCAGGGGC-------CGUGGCA--AGCAGCAACCUCAAUUAGGGGUUGUCAUCC
((..((.(((((..((((((((.........----------..))))))))))-------)))..))--..))((((((((.....))))))))..... ( -32.40)
>consensus
______ACUAGCGUCCUUGGGGUAGAAGAAGACAGAGAGCUGCCGACAGGGAC_______UGUGGCAA_AGCGGCAACCUCAAUUAGGGGUUGUCAUCU
............(((((((((((((..............))))).))))))))...........((....))(((((((((.....))))))))).... (-25.09 = -26.09 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:33 2006