Locus 2527

Sequence ID 3L_DroMel_CAF1
Location 7,084,409 – 7,084,502
Length 93
Max. P 0.635025
window3925

overview

Window 5

Location 7,084,409 – 7,084,502
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 96.06
Mean single sequence MFE -16.78
Consensus MFE -14.53
Energy contribution -14.01
Covariance contribution -0.53
Combinations/Pair 1.12
Mean z-score -1.47
Structure conservation index 0.87
SVM decision value 0.21
SVM RNA-class probability 0.635025
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 7084409 93 + 23771897
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGGGCUCUUAACAAAAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))((((....))))...(((((((....))))))).... ( -18.04)
>DroSec_CAF1 96790 93 + 1
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGAGCUCUUAACAAGAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -14.84)
>DroSim_CAF1 129485 93 + 1
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGGGCUCUUAACAAGAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))((((....))))...(((((((....))))))).... ( -18.04)
>DroEre_CAF1 112982 93 + 1
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCAGAGCUCUUAACAAAAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -15.44)
>DroYak_CAF1 112348 93 + 1
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCAGAGCUCUUAACAAAAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... ( -15.44)
>DroAna_CAF1 111424 91 + 1
UAACAUGAGCAUUUAGCGCAC--ACAAAUUAUAAUUUCAAAUAUCGCAAAGUGCCACUUGAGAGCGGGGCUCUUAACGAAAAUGUUAAGCAUU
(((((((.((((((.(((...--..((((....)))).......))).)))))))..((((((((...)))))))).....))))))...... ( -18.90)
>consensus
UAACAUGAGCAUUUAGCGCACACACAAAUUAUAAUUUCAAAUAACGCAAAGUGCCACUCGAGAUCGGAGCUCUUAACAAAAAUGUUAAGCAUU
.....((.((((((.(((.......((((....)))).......))).))))))))(((.......)))..(((((((....))))))).... (-14.53 = -14.01 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:54 2006