| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 697,746 – 697,839 |
| Length | 93 |
| Max. P | 0.500000 |
| Location | 697,746 – 697,839 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.35 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -20.24 |
| Energy contribution | -19.60 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 697746 93 - 23771897 CCAUAGAGCGG-GCACAUAACCAUGCCCAUUCCGUAUCCACGUGUGCGUUCUGGCCGCCUUCUGGCAAUUGGCAGUACCAAUACCCAAUACCCA------------- ...((((((((-(((........))))).....((((......))))))))))...(((....))).(((((.....)))))............------------- ( -25.20) >DroSec_CAF1 53383 93 - 1 CCAUAGAGCGG-GCACAUACCCAUGCCCAUUCCGUAUCCACGUGUGCGUUCUGGCCGCCGUCUGGCAAUUGGCAGGACCAAUGCCCAAUACCCA------------- ....(((((((-(((........))))).....((((......)))))))))(((.(((....))).(((((.....)))))))).........------------- ( -26.80) >DroSim_CAF1 53676 93 - 1 CCAUAGAGCGG-GCACAUACCCAUGCCCAUUCCGUAUCCACGUGUGCGUUCUGGCCGCCGUCUGGCAAUUGGCAGUACCAAUACCCAAUACCCA------------- ...((((((((-(((........))))).....((((......))))))))))((((.....)))).(((((.....)))))............------------- ( -24.50) >DroEre_CAF1 55495 99 - 1 CCAUAGAGCGU-GUACAUACCCAUACCCAUUCAGUAUCCACGUGUGCGUUCUGGUCGCCUUCUGGCAAUUGGCAGUACCAAUACCCAAUACCCAAU-------AUCC ....((((((.-.(((......((((.......))))....)))..))))))(((.(((....))).(((((.....))))))))...........-------.... ( -22.60) >DroYak_CAF1 57426 107 - 1 CCAUAGAGUAUGGUACAUACCCAUACCCAUUCCGUAUCCACGUGUGCGUUCUGGUCGCCUUCUGGCAAUUGGCUGUACCAAUACCCAAUACCCAAUACCGAAUACCC .....(.((((((((((...(((...(((...(((((......)))))...)))..(((....)))...))).)))))).)))).)..................... ( -23.90) >consensus CCAUAGAGCGG_GCACAUACCCAUGCCCAUUCCGUAUCCACGUGUGCGUUCUGGCCGCCUUCUGGCAAUUGGCAGUACCAAUACCCAAUACCCA_____________ ...((((((...((((((....((((.......))))....))))))))))))...(((....))).(((((.....)))))......................... (-20.24 = -19.60 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:32 2006