| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,975,833 – 6,975,952 |
| Length | 119 |
| Max. P | 0.900872 |
| Location | 6,975,833 – 6,975,952 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.54 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -17.50 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.900872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6975833 119 + 23771897 AUCAUAAUAUUGUUUAAUGAAAGCAGACAGUUGGCGUUGAAAGACUAAGAGGGUCCCUCGGUAAGCAGCUGUCUGUCUGCAAGUCA-UGAUGCACUUGAAAAAAAAAAUAUUUGAAAAAU .(((.((((((((...((((..((((((((.(((((((....)))...((((...))))........)))).))))))))...)))-)...))..((....))...)))))))))..... ( -32.30) >DroSec_CAF1 45727 117 + 1 AUCAUAAUAUUGUUUAAUGAAAGCAGGCAGUUGGCGAUGAAAGACUAAGAGGGUCCCUCCGUAACCAGCUGUCAGUCUGCAAGUCA-UGAUGCACUUGAAAA--AAAAUGUGUAAAAAAU ................((((..((((((((((((..(((...((((.....))))....)))..))))))))....))))...)))-)..(((((.......--.....)))))...... ( -27.60) >DroSim_CAF1 45519 116 + 1 AUCAUAAUAUUGUUUAAUGAAAGCAGGCAGUUGGCGAUGAAAGACUAAGAGGCUCCCUCGGUAACCAGCUGUCUGUCUGCAAGUCA-UGAUGCACUUGAAA---AAAAUAUGUAAAAAAU ..........(((...((((..((((((((.((((.............((((...))))((...)).)))).))))))))...)))-)...))).......---................ ( -27.70) >DroEre_CAF1 45639 107 + 1 AUCAUAAUAUUGUUAAAUGAAACCAGGCAGUUGGCGAUGAAAGAGCGAGAGGCUCCCUUGGUGGCCAGCUGU----GUGCAAGUAAGUGCUGCACAUGCAAAAAUA-AUUUU-------- .........((((.............(((((((((.((.((.((((.....))))..)).)).)))))))))----(((((.((....)))))))..)))).....-.....-------- ( -32.80) >DroYak_CAF1 47005 107 + 1 AUAAUAAUAUUGUUUAAUGAAACCAGGCAGUUGGCGAUGAAAGAUCGCGAGGGUCCCUCGGUAACCAGCUGU----CUGCAACUAAAUGCUGCACAUGAAAAAAUA-AUUGG-------- ........(((((((.(((.....((((((((((((((.....))))(((((...)))))....))))))))----))(((.(.....).))).)))....)))))-))...-------- ( -28.30) >consensus AUCAUAAUAUUGUUUAAUGAAAGCAGGCAGUUGGCGAUGAAAGACUAAGAGGGUCCCUCGGUAACCAGCUGUC_GUCUGCAAGUCA_UGAUGCACUUGAAAAAAAAAAUAUGU_AAAAAU .........................(((((((((...(((..((((.....))))..)))....)))))))))....((((.........)))).......................... (-17.50 = -17.62 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:19 2006