Locus 2466

Sequence ID 3L_DroMel_CAF1
Location 6,970,789 – 6,970,904
Length 115
Max. P 0.921568
window3803

overview

Window 3

Location 6,970,789 – 6,970,904
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.88
Mean single sequence MFE -37.94
Consensus MFE -31.14
Energy contribution -32.02
Covariance contribution 0.88
Combinations/Pair 1.03
Mean z-score -1.80
Structure conservation index 0.82
SVM decision value 1.14
SVM RNA-class probability 0.921568
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6970789 115 + 23771897
UACAGGGGCGUAAAGGACCAGUUGGUCC-----GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA
....(((((((...(((((....)))))-----.))))..(((((((.(((((...((((.......))))))))))))))))....(((.......))).......)))(....).... ( -40.90)
>DroSec_CAF1 39744 103 + 1
UACAG----------GACCA--UGGUCC-----GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA
....(----------(((..--..))))-----(.(((.((((((((.(((((...((((.......))))))))))))))......(((.......)))........)))))).).... ( -34.00)
>DroSim_CAF1 40513 115 + 1
UACAGGGGCGUAAAGGACCAGUUGGUAC-----GAUGCACGGCCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA
....(((((((...(.(((....))).)-----.))))..(((((((.(((((...((((.......))))))))))))).......(((.......))))))....)))(....).... ( -33.60)
>DroEre_CAF1 40743 115 + 1
UACAGGGGCGUGAAGGACCAGUUGGUCC-----GCUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAGCCCGGCGACAACA
.....((((((((.(((((....)))))-----........((((((.(((((...((((.......))))))))))))))))))).(((.......)))......))))(....).... ( -43.50)
>DroYak_CAF1 41829 120 + 1
GACAGGGGCGUGAAGGACCAGUUGGUUCAGUUGGAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA
..............(((((....))))).((((..(((.((((((((.(((((...((((.......))))))))))))))......(((.......)))........)))))).)))). ( -37.70)
>consensus
UACAGGGGCGUAAAGGACCAGUUGGUCC_____GAUGCACGGUCAGUUGGCCAUUAAACAGAUUACAUGUUUGGCCACUGAUUCACUGCCACUAAGAGGCGCUUAAACCCGGCGACAACA
....(((.......(((((....)))))........((..(((((((.(((((...((((.......))))))))))))))))....(((.......))))).....)))(....).... (-31.14 = -32.02 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:59 2006