| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,962,527 – 6,962,632 |
| Length | 105 |
| Max. P | 0.578426 |
| Location | 6,962,527 – 6,962,632 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.66 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -14.71 |
| Energy contribution | -13.82 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.578426 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6962527 105 - 23771897 C--UUUAGUAAU--UUCCAAUCGGGCAUACAGAUAUUU--UUCACUUUUGGCCAUUUUUCCCGCGGCUUCUGCGGUUU-GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .--....(((..--.(((....)))..)))........--........(((((.(((...((((((...))))))...-))))))))..((((((........))))))... ( -21.00) >DroVir_CAF1 31429 101 - 1 UUGUUGAGUGUUCACUGUAUUUAUGU----GCACAAG-------CCUUUGGCUAGCUGUUCGCUAGCCUCUGCGGACACAGGGGCUAUAAAUUAUUUUUACGUUUGAUUAUU .......((((((..(((((....))----)))...(-------(....(((((((.....)))))))...))))))))................................. ( -25.60) >DroSec_CAF1 32001 107 - 1 CUCUUUAGUAAU--UUCCAAUCGGGCAUACAGAUAUUU--UUCACUUUUGGCCAUAUUUCCCGCGGCUUCUGCGGUUU-GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .((...(((((.--.(((....))).............--........(((((.......((((((...))))))...-...)))))..........)))))...))..... ( -20.42) >DroSim_CAF1 33049 105 - 1 C--UUUAGUAAU--UUCCAAUCGGGCAUACAGAUAUUU--UUCACUUUUGGCCAUUUUUCCCGCGGCUUCUGCGGUUU-GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .--....(((..--.(((....)))..)))........--........(((((.(((...((((((...))))))...-))))))))..((((((........))))))... ( -21.00) >DroEre_CAF1 32427 107 - 1 C--UUUAGUAAU--UUCCAAUCGGCCAAACAGAUAUUUUCUUCACUUUUGGCCAUUUUUCAUGCGGCUUUUGCGGUUU-GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .--........(--((((((..(((((((..((........))...))))))).........((.((....)).))))-))))).....((((((........))))))... ( -21.30) >DroYak_CAF1 33104 105 - 1 C--UUUAGUAAU--UUCCAAUCGGGCAUACAGAUAUUU--CUCACCGAUGGCCAUUUUUCCUGCGGCUUCUGCGGUUU-GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .--...(((((.--.....(((((......(((....)--))..)))))((((.....(((.((.((....)).))..-)))))))...........))))).......... ( -22.40) >consensus C__UUUAGUAAU__UUCCAAUCGGGCAUACAGAUAUUU__UUCACUUUUGGCCAUUUUUCCCGCGGCUUCUGCGGUUU_GGAGGCCAUAAAUUAAUUUUACUUUUGAUUAUU .......((((.....((....))........................(((((.......((((((...)))))).......)))))..........))))........... (-14.71 = -13.82 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:51 2006