Locus 2456

Sequence ID 3L_DroMel_CAF1
Location 6,947,517 – 6,947,637
Length 120
Max. P 0.713258
window3786

overview

Window 6

Location 6,947,517 – 6,947,637
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.21
Mean single sequence MFE -28.55
Consensus MFE -17.15
Energy contribution -18.18
Covariance contribution 1.03
Combinations/Pair 1.27
Mean z-score -1.88
Structure conservation index 0.60
SVM decision value 0.38
SVM RNA-class probability 0.713258
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6947517 120 + 23771897
UUCUACACUCUUAUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGCGGAGAUCUCUUGAUCUUCUCCUCAAACAGAUCCUUCUUGUUGAGGAACAGUAUUAUGGAUGUUUCCACAAAC
...(((((.............)))))...((((((((((.((((..(((((((((....)))))))(((((((..(((....)))..)))))))...))...)))))))))))).))... ( -35.72)
>DroVir_CAF1 16425 118 + 1
AUGU--UGUAUCGUCUUACCAGUGUAUUCCGGAAAGCAUAUCGUAAGGGGAGAUCGCUUGAUUUUCUCCUCGAACAAAUCCUUUUUGUUCAAGAAGAGUAUUAUAGAUGUUUCCACAAAC
...(--(((....((((((..((((.((....)).))))...))))))((((((..((((((.((((.((.(((((((.....))))))).)).)))).)))).))..)))))))))).. ( -28.00)
>DroGri_CAF1 16366 114 + 1
UUA----U--UUCAGUUACCUGUGUAUUCCGGAAAGCAUAUCGUUAGGGGAGAUCGCUUGAUUUUCUCCUCGAACAAAUCCUUUUUGUUCAAGAAGAGUAUUAUGGACGUUUCCACAAAC
...----.--........((...((((((.................(((((((...........)))))))(((((((.....))))))).....))))))...)).............. ( -24.20)
>DroWil_CAF1 17935 120 + 1
UUUUGCUCUUUACACUUACCUGUGUACUCUGGGAAACAUAUCGUCAGCGGUGAACGUUUGAUUUUCUCUUCAAACAGAUCCUUCUUAUUCAGAAACAAUAUAAUGGAUGUCUCCACAAAC
.((((.....(((((......))))).....(((.((.(((((....)))))...((((((........))))))..((((....((((.......))))....)))))).))).)))). ( -22.40)
>DroMoj_CAF1 16393 118 + 1
UUCC--AUUGUUGCCUUACCAGUGUAUUCUGGGAAACAUAUCGUUAGGGGAGAUCGUUUAAUCUUCUCCUCAAACAAAUCCUUUUUGUUCAAGAAUAAUAUAAUGGAUGUUUCCACAAAC
....--.((((........(((......)))((((((((.(((((((((((((...........))))))).((((((.....))))))...........)))))))))))))))))).. ( -30.20)
>DroAna_CAF1 14985 108 + 1
------------GUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGAGGAGAUCGCUUGAUUUUCUCCUCAAACAGAUCCUUCUUGUUGAGGAAGAGUAUGAUGGAGGUUUCCACAAAC
------------.................((((((((...((((((..(((((((....)))))))(((((((..(((....)))..)))))))......))))))..)))))).))... ( -30.80)
>consensus
UUCU___CU_UUGUCUUACCUGUGUACUCUGGGAAGCAUAUCGUCAGGGGAGAUCGCUUGAUUUUCUCCUCAAACAAAUCCUUCUUGUUCAAGAAGAGUAUUAUGGAUGUUUCCACAAAC
...............................((((((((.(((((((((((((((....)))))))))((..(((((.......)))))..)).......))))))))))))))...... (-17.15 = -18.18 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006