Locus 2448

Sequence ID 3L_DroMel_CAF1
Location 6,914,333 – 6,914,441
Length 108
Max. P 0.654263
window3774

overview

Window 4

Location 6,914,333 – 6,914,441
Length 108
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.32
Mean single sequence MFE -30.96
Consensus MFE -18.06
Energy contribution -18.06
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.58
SVM decision value 0.25
SVM RNA-class probability 0.654263
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6914333 108 + 23771897
CCCCCGG----AAUCGAGGGCUUAGCCUUUGUUGUUGACGAUGGCGAUGGUGAUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA
.(((((.----...)).)))....(((.(..(..(((.(....))))..)..).)))((((((((((((((.................))))).)))))))))-......... ( -35.23)
>DroPse_CAF1 191656 94 + 1
UCCCUGGCCAACACCCGGGCCUUAGUCUUUGUUGUUGU------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA
.....((((........))))...........((((..------------------.((((((((((((((.................))))).)))))))))-..))))... ( -28.23)
>DroSec_CAF1 167622 102 + 1
CCCCCGG----AAUCAAGGGCUUAGCCUUUGUUGUUGGCGGUGGCG------AUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA
.((((((----...(((((((...)))))))...)))).))..((.------...))((((((((((((((.................))))).)))))))))-......... ( -35.43)
>DroEre_CAF1 182246 102 + 1
GCCACGG----AAUCGAGGGCUUAGCCUUUGUUGUUGGCGAUGGUG------AUGGCGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA
((((((.----.(((((((((...))))))((.....)))))..))------.))))((((((((((((((.................))))).)))))))))-......... ( -34.53)
>DroAna_CAF1 190351 85 + 1
CCCUCGC----AUCC-----UUGAGCCUUUGUUGUUGG------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC-AAAACAUUA
.......----....-----....(((.........))------------------)((((((((((((((.................))))).)))))))))-......... ( -23.83)
>DroPer_CAF1 189743 95 + 1
UCCCUGGCCAACACCCGGGCCUUAGUCUUUGUUGUUGU------------------CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUCCAAAACAUUA
.....((((........))))...........((((..------------------.((((((((((((((.................))))).)))))))))...))))... ( -28.53)
>consensus
CCCCCGG____AACCCAGGGCUUAGCCUUUGUUGUUGG__________________CGAUUGUGUGCGGCGAUAAUAAUUACACGUCACGCUGCCACGCAAUC_AAAACAUUA
.........................................................((((((((((((((.................))))).))))))))).......... (-18.06 = -18.06 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:31 2006