| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,901,242 – 6,901,333 |
| Length | 91 |
| Max. P | 0.992782 |
| Location | 6,901,242 – 6,901,333 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.65 |
| Mean single sequence MFE | -17.97 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.58 |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.992782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6901242 91 - 23771897 AAAUUAACAAUUAACAGAGCGCU--UAAAAUGAACAAUCGCAAAUCGCGGCUUACAAAA--UUGCCGUGGAAAUGCCAUGAUAUAAAAUUG------------AA-AA-- .......(((((......(((.(--(.........)).)))...(((((((........--..)))))))................)))))------------..-..-- ( -14.50) >DroPse_CAF1 176927 104 - 1 AAAUUAACAAUUAACAGACCGCU--GGAAAUGAACAAUCGCAAAUCGCGGCUUACAAAA--UAGCCGUGGAAAUGCCAUGAUAUAGAACUGGUAGAAAAACAAAAAAA-- ..................(..(.--.(.........((.(((..((((((((.......--.))))))))...))).)).........)..)..).............-- ( -18.57) >DroGri_CAF1 167311 84 - 1 AAAUUAACAAUUAACAGAGCGCU--UGAAAUGUACAAUCGCAAAUCGCGGCUUACAAAA--AUGCCGUGAAA---CAAAUAUAUAAAA-------------------AAA ..................(((.(--((.......))).)))...(((((((........--..)))))))..---.............-------------------... ( -16.30) >DroMoj_CAF1 175379 82 - 1 AAAUUAACAAUUAACAGAACGCU--UGAAAAGAACAAUCGCAAAUCGCGGCUUACAAAAAAA-GCCGCGCAG---CAUGUAUAUAAAA---------------------- .......................--..............((....((((((((.......))-))))))..)---)............---------------------- ( -14.90) >DroAna_CAF1 175477 92 - 1 AAAUUAACAAUUAACAGAGAGCUCUGGCAGCGAACAAUCGCAAAUCGCGGCUUACAAAA--UAGCCGUGGAAAUGCCAUGAUA-AAAAUUA------------AA-AA-- ......................(((((((((((....))))...((((((((.......--.))))))))...))))).))..-.......------------..-..-- ( -25.00) >DroPer_CAF1 174872 103 - 1 AAAUUAACAAUUAACAGACCGCU--GGAAAUGAACAAUCGCAAAUCGCGGCUUACAAAA--UAGCCGUGGAAAUGCCAUGAUAUAGAACUGGUAGAAAAACAAAA-AA-- ..................(..(.--.(.........((.(((..((((((((.......--.))))))))...))).)).........)..)..)..........-..-- ( -18.57) >consensus AAAUUAACAAUUAACAGAGCGCU__GGAAAUGAACAAUCGCAAAUCGCGGCUUACAAAA__UAGCCGUGGAAAUGCCAUGAUAUAAAA_UG____________AA_AA__ .......................................(((..(((((((............)))))))...))).................................. (-10.36 = -10.95 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:21 2006