Locus 242

Sequence ID 3L_DroMel_CAF1
Location 659,413 – 659,503
Length 90
Max. P 0.811405
window360

overview

Window 0

Location 659,413 – 659,503
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 77.08
Mean single sequence MFE -19.57
Consensus MFE -16.15
Energy contribution -17.23
Covariance contribution 1.08
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.83
SVM decision value 0.65
SVM RNA-class probability 0.811405
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 659413 90 + 23771897
------------CAUUCCCACUUCAUUUCCAUUCACAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA
------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90)
>DroSec_CAF1 15170 90 + 1
------------CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA
------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90)
>DroSim_CAF1 15100 90 + 1
------------CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA
------------.........................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90)
>DroEre_CAF1 15507 101 + 1
-ACUCCCACUUCCAUUCCCACUUGAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG-----ACGCGCUGAGA
-....................................(((((((.(((((...)))))))))))).......(((....)))..(((((((-----...))).)))) ( -19.90)
>DroYak_CAF1 15727 102 + 1
AAUUCCCAUUCCCAUUCCCACU-----UCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCGUCGCAACGCGCUGAGA
......................-----..........(((((((.(((((...))))))))))))..(((..(((....))).....(((((....)))))..))). ( -22.80)
>DroPer_CAF1 21746 69 + 1
------------UUACCCGAUUCCAUUCCCAGUCC---CAUGAGCAACUGUUGUGGUUCUCGUGUGAUUCUCUCGU-----------------------CUCUGAGA
------------((((.(((..((((...((((..---(....)..))))..))))...))).)))).((((....-----------------------....)))) ( -15.00)
>consensus
____________CAUUCCCACUUCAUUUCCAUUCCCAACAUGAGCAACUGUUUCGGUUCUCGUGUGACUCUCCGGAUUCCCGAUUCUCGCG_____ACGCGCUGAGA
.....................................(((((((.((((.....)))))))))))...(((((((....))).....((((......))))..)))) (-16.15 = -17.23 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:15 2006