| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,786,271 – 6,786,365 |
| Length | 94 |
| Max. P | 0.962282 |
| Location | 6,786,271 – 6,786,365 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 73.01 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -9.52 |
| Energy contribution | -10.18 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6786271 94 - 23771897 -----------------AGCU---CGAG---CUAGUUGUACAAAUCUCAAUGAUUAGAUGCAAUUAGACAAAAGCGUUUAAAUCGCAAUCAGUUGUGCCACUAGCAAAGCAAACAAA -----------------.(((---...(---(((((.((((((.......(((((((((((............)))))).))))).......)))))).))))))..)))....... ( -26.14) >DroPse_CAF1 59278 79 - 1 -----------------UGCC---CGAACGCCUUGUCUUACAAAUCUCCAUGAUUAUAUGCAAUUAGACGAAAGCGUUUAAAUUGCAAACAAAU--------AG----------AAA -----------------....---........((((......((((.....))))...((((((((((((....))))).))))))).))))..--------..----------... ( -13.00) >DroSec_CAF1 47034 94 - 1 -----------------AGCU---CGAG---CUAGUUGUACAAAUCUCAAUGAUUAGAUGCAAUUAGACAAAAGCGUUUAAAUCGCAAUCAGUUGAGCCACUAGCAAAGCAAACAAA -----------------.(((---((((---((((((((((.((((.....)))).).))))))))).)....(((.......)))......))))))................... ( -22.30) >DroEre_CAF1 60263 91 - 1 -----------------GGUC--CGAAG---CUGGUUGUACAAAUCUCAAUGAUUAGAUGCAAUUAGACAAAAGCGCUUAAAUCGCAAUCAGUUGUGGCACUAGCAA---A-GCGAA -----------------....--....(---((((((((((.((((.....)))).).))))))))).).....(((((....(((((....)))))((....)).)---)-))).. ( -21.40) >DroYak_CAF1 50724 96 - 1 -----------------AGUUGCUUGUA---CUGGUUGUAAAAAUCACAAUGAUUAGAUGCAAUUAGACAAAAGCGUUUAAAUCGCAAUCAGUUGUGCCACUAGCAAGGCA-GCAAA -----------------.(((((((..(---((((((((.....((.....))((((((((............))))))))...)))))))))..(((.....))))))))-))... ( -25.70) >DroAna_CAF1 57423 111 - 1 GCUGGAGCUGGAGCUGGAGCU---GGAG---CCGGCCUCACAAAUCUCUAUGAUUAUAUGCAAUUAGACAAAAGCGUUUAAAUCGCAAUCAGUUGAGCCACCAGCCAGCCAAACAAA ((((..(((((.(.((..(((---(...---.))))..)))....(((..((((....(((..((((((......))))))...)))))))...)))...)))))))))........ ( -31.30) >consensus _________________AGCU___CGAG___CUGGUUGUACAAAUCUCAAUGAUUAGAUGCAAUUAGACAAAAGCGUUUAAAUCGCAAUCAGUUGUGCCACUAGCAA_GCA_ACAAA ..................((...........(((((((((..((((.....))))...)))))))))......(((.......))).................))............ ( -9.52 = -10.18 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:50 2006