| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,775,198 – 6,775,308 |
| Length | 110 |
| Max. P | 0.790132 |
| Location | 6,775,198 – 6,775,308 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 82.10 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.86 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6775198 110 + 23771897 AAAAUAUAGGUAUAAAAGUUAAACAACAAC------AAGAACAACCUUUGGCCAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUUCCACCGU ........(((...((((............------.........)))).)))...(((((((((.........(((.(((((......))))).)))......))))...))))) ( -19.06) >DroPse_CAF1 46121 105 + 1 AAAACUGAAAUAAAAAACUAAAAAA----A------AAAACCAACCUUUGG-CAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUGCCGACGC .........................----.------....(((.....)))-...((((((((((.........(((.(((((......))))).)))......)))))))).)). ( -22.76) >DroEre_CAF1 49250 116 + 1 AAAGUAUAGGUAUAAAAGUUAAACAACAACAAAGACAAAAACAACCUUUGGCCAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUUCCAGCGU ........(((......(((....)))..(((((...........)))))))).((((((.((((.........(((.(((((......))))).)))......)))).)).)))) ( -24.36) >DroYak_CAF1 39545 116 + 1 AAAAUAUAGGUAUAAAAGUUAAACAACAGCAACAACAAAGACAACCUUUGGCCAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUUCCAGCGU ........(((......(((....)))........(((((.....)))))))).((((((.((((.........(((.(((((......))))).)))......)))).)).)))) ( -25.36) >DroAna_CAF1 46274 94 + 1 AAAAUACAGAAAUAAAA---------------------AAAAAACCUUUGG-CAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUACCAACGU .................---------------------...........(.-...)..(((((((.........(((.(((((......))))).)))......)))))))..... ( -19.46) >DroPer_CAF1 45835 103 + 1 AAAACUGAAAUAAAAAACUAAAAA------------AAAACCAACCUUUGG-CAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUGCCGACGC ........................------------....(((.....)))-...((((((((((.........(((.(((((......))))).)))......)))))))).)). ( -22.76) >consensus AAAAUAUAGAUAUAAAAGUUAAACA____C______AAAAACAACCUUUGG_CAACGCGGUAGCCAUAAAUCAAAGUCGCGUUAAUGAAAGCGCAAUUAAAACGGGCUUCCAACGU ..........................................................((.((((.........(((.(((((......))))).)))......)))).))..... (-13.86 = -13.86 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:37 2006