Locus 2395

Sequence ID 3L_DroMel_CAF1
Location 6,735,208 – 6,735,321
Length 113
Max. P 0.663820
window3695

overview

Window 5

Location 6,735,208 – 6,735,321
Length 113
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -19.67
Consensus MFE -14.74
Energy contribution -16.19
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -2.49
Structure conservation index 0.75
SVM decision value 0.27
SVM RNA-class probability 0.663820
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6735208 113 - 23771897
UAAACUUAUGAAACAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUCUAUAUAAACCAAUUGCAGCACUUUAAGG-AUAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA
..............(((...................(((((((.............)))))))..(((((((((-(((((((.....))))))))).)))))))....)))... ( -20.92)
>DroSec_CAF1 8269 112 - 1
UAAACUUAUAAAUCAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUUUAUAUAAGCCAAUUGCAGCACCUUAUGG-AUA-UUUUACCAAAAAUGUCCUUUGCAGUAACAGCUCAA
((((((......(((......)))..))))))....(((((((.............)))))))(((......((-(((-((((....)))))))))..)))............. ( -17.22)
>DroSim_CAF1 6449 114 - 1
UAAACUUAUGAAACAGCAACAUAAAUAUUUUAAAAAUGCAAUAUUCUAUAUAAACCAAUUGCAUGACUUUAAGGCACAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA
..............(((..................(((((((...............))))))).(((((((((.(((((((.....))))))).)))))))))....)))... ( -20.86)
>consensus
UAAACUUAUGAAACAGCAACAUGAAUAGUUUAAAUAUGCAAUUUUCUAUAUAAACCAAUUGCAGCACUUUAAGG_AUAUUUUUACUAAAAAUGUCCUUUGAAGUAACAGCUCAA
..............(((...................(((((((.............)))))))..(((((((((.(((((((.....))))))).)))))))))....)))... (-14.74 = -16.19 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:16 2006