| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 653,617 – 653,713 |
| Length | 96 |
| Max. P | 0.951267 |
| Location | 653,617 – 653,713 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -31.77 |
| Consensus MFE | -16.06 |
| Energy contribution | -17.63 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 653617 96 + 23771897 CCGGCCAGUUAGGCCGCGGGCAGGCAGCCAAAUGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUAUGUUGAUAUAGACAAGCAGAUAAGCAGG-- .(((((.(((((((((..(((.....)))...)))))...(((((....)))))..)))))))))...((((......)))).((......))...-- ( -38.00) >DroSec_CAF1 9492 96 + 1 CCGGCCAGUUAGGCCGCGGGCAGGCAGCCAAACGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUACGUUGAUAUAGACAAGCAGAUAAGCAGG-- .(((((.(((((((((..(((.....)))...)))))...(((((....)))))..)))))))))....(((......)))..((......))...-- ( -39.00) >DroSim_CAF1 9429 96 + 1 CCGGCCAGUUAGGCCGCGGGCAGGCAGCCAAAUGGCCAAAUGGCCGAAUGGCCAGAUAGCGGCCGAUAUGUUGAUAUAGACAAGCAGAUAAGCAGG-- .(((((.(((((((((..(((.....)))...)))))...(((((....)))))..)))))))))...((((......)))).((......))...-- ( -38.00) >DroEre_CAF1 9527 80 + 1 CCGGCCAGUUAGGCCGCGGGCAGGCAG--------CCAA--------AUGGCCAGAUAGCGGCCGAUAUGUUGAUAUAGACAAGCAGAUAAGCAGG-- .(((((.(((((((((..(((.....)--------))..--------.)))))...)))))))))...((((......)))).((......))...-- ( -28.20) >DroYak_CAF1 9707 88 + 1 CCGGCCAUUUAGGCCGCGGGCAGGCAGGCAAAUGGCCAA--------AUGGCCAGAUAGCGAGCGAUAUGUUGAUAUAGACAAGCAGAUAAGCAGG-- ((((((((((.(((((...((......))...)))))))--------)))))).........((....((((..........)))).....)).))-- ( -29.10) >DroAna_CAF1 9633 76 + 1 UGGACCAUUUAGGCUACGGGCUAGCAGCU----------------------CUAGAUAGUGCUGCAUAUGUAGAUAUAGACAAGGAGAUAAACAUGGA ....((((.(((.(....).)))(((((.----------------------((....)).)))))............................)))). ( -18.30) >consensus CCGGCCAGUUAGGCCGCGGGCAGGCAGCCAAAUGGCCAA________AUGGCCAGAUAGCGGCCGAUAUGUUGAUAUAGACAAGCAGAUAAGCAGG__ ((.((......((((((.(((.....)))....(((((..........))))).....))))))....((((......)))).........)).)).. (-16.06 = -17.63 + 1.58)
| Location | 653,617 – 653,713 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -29.40 |
| Consensus MFE | -17.94 |
| Energy contribution | -19.15 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 653617 96 - 23771897 --CCUGCUUAUCUGCUUGUCUAUAUCAACAUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCAUUUGGCUGCCUGCCCGCGGCCUAACUGGCCGG --...((......))..................(((((((((..(((((....)))))..)))).....((((((......)))))).....))))). ( -36.60) >DroSec_CAF1 9492 96 - 1 --CCUGCUUAUCUGCUUGUCUAUAUCAACGUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCGUUUGGCUGCCUGCCCGCGGCCUAACUGGCCGG --...((......))..................(((((((((..(((((....)))))..)))).(((.((((((......)))))).))).))))). ( -38.90) >DroSim_CAF1 9429 96 - 1 --CCUGCUUAUCUGCUUGUCUAUAUCAACAUAUCGGCCGCUAUCUGGCCAUUCGGCCAUUUGGCCAUUUGGCUGCCUGCCCGCGGCCUAACUGGCCGG --...((......))..................(((((((((..(((((....)))))..)))).....((((((......)))))).....))))). ( -36.60) >DroEre_CAF1 9527 80 - 1 --CCUGCUUAUCUGCUUGUCUAUAUCAACAUAUCGGCCGCUAUCUGGCCAU--------UUGG--------CUGCCUGCCCGCGGCCUAACUGGCCGG --...........((..(((.((((....)))).))).))...(((((((.--------((((--------((((......)))))).)).))))))) ( -25.60) >DroYak_CAF1 9707 88 - 1 --CCUGCUUAUCUGCUUGUCUAUAUCAACAUAUCGCUCGCUAUCUGGCCAU--------UUGGCCAUUUGCCUGCCUGCCCGCGGCCUAAAUGGCCGG --...((......))............................((((((((--------((((((....((......))....)))).)))))))))) ( -24.60) >DroAna_CAF1 9633 76 - 1 UCCAUGUUUAUCUCCUUGUCUAUAUCUACAUAUGCAGCACUAUCUAG----------------------AGCUGCUAGCCCGUAGCCUAAAUGGUCCA ................(((.(((......))).)))(.(((((.(((----------------------.(((((......)))))))).))))).). ( -14.10) >consensus __CCUGCUUAUCUGCUUGUCUAUAUCAACAUAUCGGCCGCUAUCUGGCCAU________UUGGCCAUUUGGCUGCCUGCCCGCGGCCUAACUGGCCGG .....((......)).................(((((((.....((((((..........))))))...((((((......))))))....))))))) (-17.94 = -19.15 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:09 2006