Locus 2378

Sequence ID 3L_DroMel_CAF1
Location 6,682,048 – 6,682,147
Length 99
Max. P 0.857579
window3667

overview

Window 7

Location 6,682,048 – 6,682,147
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 76.76
Mean single sequence MFE -23.23
Consensus MFE -11.54
Energy contribution -11.85
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -2.14
Structure conservation index 0.50
SVM decision value 0.81
SVM RNA-class probability 0.857579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6682048 99 + 23771897
CUUUUCACAAUAUUCACCUGCCCC-GGAGGCAGUUACUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGAACUAUAGAAACUACUCAUACUUCACGCUC
.................(((((..-.((.((((..(((........)))..))))...)).....))))).............................. ( -16.70)
>DroSec_CAF1 58768 98 + 1
CUUUCCACAAUAUCCACCUGCCCC-GGUGGAAGUUUCUUCUGCAUUGGUCCUUGCAAUUCAUUUUGGCAGGACUAUGG-AACUACUCAUACUUCACGCUC
..(((((.....((((((......-))))))..............(((((((.((((......)).))))))))))))-))................... ( -24.50)
>DroSim_CAF1 77046 98 + 1
CUUUUCACAAUAUCCACCUGCCCC-GGUGGCAGUUUCUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGGACUAUGG-AACUACUCAUACUUUACGCUC
............((((((((((..-((((((((......))))((((.......)))).))))..))))))....)))-).................... ( -22.10)
>DroEre_CAF1 70659 98 + 1
AUA-UCACAAUAUCCACCUGCCCCAGGUGGCGGGUAAUUCUGCAUUGGUGCCUGCACUUCAUUUUGGCAGGACUACAG-AGGCACCCAUACUUCACGCUC
...-.........(((((((...))))))).((((..(((((...((((.(((((.(........)))))))))))))-))..))))............. ( -33.40)
>DroYak_CAF1 67928 90 + 1
---------AUAUCCACCUGCCCCAGGUGGCGGGUAAUUCUGCAUUGGUCCCUGCAAUUCCUUUUGGCAGGACUACAG-AAGCACUCAUACUUCACGCUC
---------....(((((((...))))))).((((..(((((...((((((.(((((......)).))))))))))))-))..))))............. ( -29.70)
>DroAna_CAF1 65712 81 + 1
UUU---------UCCACCUGCCCC-GCUUGUGUUUAUUCCUGCACUCGUCC-AGCCAUUCAUUUUGGCAGCGCUAC--------UCCAAGUUUCACGCUU
...---------...........(-(((.((((........))))......-.((((.......))))))))....--------................ ( -13.00)
>consensus
CUU_UCACAAUAUCCACCUGCCCC_GGUGGCAGUUACUUCUGCAUUGGUCCCUGCAAUUCAUUUUGGCAGGACUACAG_AACUACUCAUACUUCACGCUC
................((((((.......((((......))))....((....))..........))))))............................. (-11.54 = -11.85 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:49 2006