Locus 2375

Sequence ID 3L_DroMel_CAF1
Location 6,669,023 – 6,669,127
Length 104
Max. P 0.532947
window3661

overview

Window 1

Location 6,669,023 – 6,669,127
Length 104
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 90.80
Mean single sequence MFE -28.47
Consensus MFE -21.72
Energy contribution -23.30
Covariance contribution 1.58
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.76
SVM decision value -0.00
SVM RNA-class probability 0.532947
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6669023 104 - 23771897
GAAAAGAAAACUCGGAUAAUUUGCUCAGGC------------GAUUGGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAACAUUUUAAAAUAUUAUCCUCUUAAGC
.............(((((((((((((((..------------..))))))))((((((.(((......))))))).))..((((((((.....)))))))))))))))........ ( -23.50)
>DroSec_CAF1 45735 116 - 1
GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAUUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC
.............(((((((...(((.((((((...))))))((((.((((.(((....)))....))))))))..)))(((((((((....))))))))))))))))........ ( -31.60)
>DroSim_CAF1 63967 116 - 1
GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC
.............(((((((..((((.((((((...))))))((((.((((.(((....)))....))))))))....))))((((((....))))))...)))))))........ ( -30.30)
>consensus
GAAAAGAAAACUCGGAUAAUUUGCUCAGGCGGCAAAGCCGUCGAUUAGGUAACCAGAUAUGGGAUGUACCAGUCUAGGGAGUUUUAAAAAGAUUUGAAAAUAUUAUCCUCUUAAGC
.............(((((((...(((.((((((...))))))((((.((((.(((....)))....))))))))..)))..(((((((....)))))))..)))))))........ (-21.72 = -23.30 +   1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:44 2006