Locus 2366

Sequence ID 3L_DroMel_CAF1
Location 6,626,192 – 6,626,295
Length 103
Max. P 0.972232
window3648

overview

Window 8

Location 6,626,192 – 6,626,295
Length 103
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -19.77
Consensus MFE -13.78
Energy contribution -13.34
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.14
Structure conservation index 0.70
SVM decision value 1.69
SVM RNA-class probability 0.972232
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6626192 103 + 23771897
ACAGACCACUAAACAGCACACAGGAGGG-CCUCGAAAGAGCAACGGUAUUGUCUCCAU---------------CCCCACAUUGCCCCUUUUUCCCCAUUUUCCCAUUUU-CCACCUCCAA
......................((((((-(.((....))))...((((.(((......---------------....))).))))........................-...))))).. ( -20.20)
>DroSec_CAF1 3237 111 + 1
AUAGACCACUAAACAGCACACAGGAGGG-CCUCCAAAGAGCAACGGUAUUGUCUCCAUCAGUCCCCCAAACCGCCCCACUCUGCCCCUUUUUCCCUAU--------UUUCCCACCUCCAA
...............(((...((..(((-((((....)))....((.((((.......)))).)).......))))..)).)))..............--------.............. ( -15.30)
>DroYak_CAF1 5235 119 + 1
ACAGACCACUAAACAGCACACAGGAGGUUGCUCCAAUGAGCAACGGCAUUGUCUCCAUCAGUUUUCCAAACUGCCCCACUUUGUCCCUUUUUCCCCAUUUCCCUAUUUU-CCACCUCCGA
......................(((((((((((....)))))))((((..((......(((((.....)))))....))..))))........................-....)))).. ( -23.80)
>consensus
ACAGACCACUAAACAGCACACAGGAGGG_CCUCCAAAGAGCAACGGUAUUGUCUCCAUCAGU___CCAAAC_GCCCCACUUUGCCCCUUUUUCCCCAUUU_CC_AUUUU_CCACCUCCAA
......................(((((...(((....)))....((((..((.........................))..))))............................))))).. (-13.78 = -13.34 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:32 2006