| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,622,831 – 6,622,947 |
| Length | 116 |
| Max. P | 0.908172 |
| Location | 6,622,831 – 6,622,947 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.51 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -22.15 |
| Energy contribution | -21.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908172 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6622831 116 - 23771897 ACCGAAAAUAAAAAUGCCGGAAAAAAAUAAGGCAUAAAGCU----UAUAUAUAUGCGCUAAAUAAAAUGUCAACGAAAGGCCAUUUAGAAGCGUGUGCUGUAAAAUGAGCAAGAUUUAUG .......(((((.(((((............)))))...(((----((((((((((((((.....(((((....(....)..)))))...)))))))).))))...)))))....))))). ( -23.90) >DroSim_CAF1 5195 116 - 1 ACCGAAAACAAAAAUGCCGGAAAAAAAUAAGGCAUAAAGCU----UAUAUAUAUGCGCUAAAUAAAAUGUCAACGAAAGGCCAUUUAGAAGCGUGUGCUGUAAAAUGAGCAAGAUUUAUG .............(((((............)))))...(((----((((((((((((((.....(((((....(....)..)))))...)))))))).))))...))))).......... ( -23.20) >DroYak_CAF1 1828 120 - 1 ACCGAAAACAAAAAUGCCGGAAAGAAAUAAGGCAUAAAGCUCAUGUAUAUAUAUGCGCUAAAUAAAAUGUCAACGGAAGGCCAUUUAGAAGCGCGUGCUGUAAAAUGAGCAAGAUUUAUG .............(((((............)))))...((((((...((((((((((((.....(((((....(....)..)))))...)))))))).))))..)))))).......... ( -30.70) >consensus ACCGAAAACAAAAAUGCCGGAAAAAAAUAAGGCAUAAAGCU____UAUAUAUAUGCGCUAAAUAAAAUGUCAACGAAAGGCCAUUUAGAAGCGUGUGCUGUAAAAUGAGCAAGAUUUAUG .............(((((............)))))...(((......((((((((((((.....(((((....(....)..)))))...)))))))).)))).....))).......... (-22.15 = -21.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:24 2006