Locus 2358

Sequence ID 3L_DroMel_CAF1
Location 6,621,002 – 6,621,117
Length 115
Max. P 0.511349
window3636

overview

Window 6

Location 6,621,002 – 6,621,117
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -45.00
Consensus MFE -35.55
Energy contribution -35.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.79
SVM decision value -0.04
SVM RNA-class probability 0.511349
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6621002 115 + 23771897
GGCAAAAUACUGGGGGUUAAGCCAUGGCUAUAAACUGGCCCCGGGGCAGCCAGCGCGGCGAAAACGCGGCAACCGCGGGCGCUAGCAAAUCAACGCCACGGCCACUGCGGGCGCC
(((......((.((((((((((....)))......))))))).))...(((.(((.(((.....(((((...)))))((((............))))...))).).)).)))))) ( -47.50)
>DroSim_CAF1 3366 115 + 1
GGCAAAAUACUGGGGGUUAAGCCAUGGCUAUAAACUGGCCCCGGGGCAGCAAGCGCGGCGAAAGCGCGGCAACCGCGGGCGGCAGCAAAUCAACGCCACGGCCACUGCGGGCGCC
(((......((.((((((((((....)))......))))))).))...((..((.((((....)).))))..((((((..(((.((........))....))).))))))))))) ( -50.00)
>DroYak_CAF1 4 89 + 1
--------------------------GCUAUAAACUGGCCCCGGGGCAGCAAACGUGGCGAAUGCGCGGCAACCGCGGGCGGCAGCAAAUCAACGCCAUGGCCACUGCGGGCGCC
--------------------------..........(((((((.((..((...(((((((....(((((...))))).((....)).......)))))))))..)).)))).))) ( -37.50)
>consensus
GGCAAAAUACUGGGGGUUAAGCCAUGGCUAUAAACUGGCCCCGGGGCAGCAAGCGCGGCGAAAGCGCGGCAACCGCGGGCGGCAGCAAAUCAACGCCACGGCCACUGCGGGCGCC
.....................................((((((((((.((....))((((....(((((...))))).((....)).......))))...))).))).))))... (-35.55 = -35.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:30:19 2006