| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,564,898 – 6,564,996 |
| Length | 98 |
| Max. P | 0.771130 |
| Location | 6,564,898 – 6,564,996 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -13.43 |
| Energy contribution | -13.02 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6564898 98 + 23771897 UUGGAGUCCAUGGACAAAGUGGGCGAUGUUCGUAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUAAUAAAUUUCAUAGUACCUUUACUAAUAUCUAAAAA ((((((((....)))(((((((((((((..(....)..))))))))).(((((((.((..---....)).))))))).....)))).......)))))... ( -24.00) >DroSec_CAF1 27575 98 + 1 UUGGAGUCUAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUGAUAAAUUUUAUAGAACCUUUCCUAAUAUCAAAAAC ..((((((((((((.....((((..(((..(....)..)))..)))).((.(((.....)---)).))....))))))))....))))............. ( -21.60) >DroSim_CAF1 27703 98 + 1 UUGGAGUCUAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC---UUAAUAAAUUGUAUAGUACCUUUACUAAUAUCCAAAAA ((((((((....)))..((((((..(((..(....)..)))..)))(((((..((((((.---........))))))..)))))..)))....)))))... ( -25.80) >DroEre_CAF1 27956 97 + 1 UUGGAAUCAAUGGACAAAGUGGGUGAUGUCCGCAAGGUUAUUGCUCAGGUGAGGUAUAAC---UCAAUACACUUUAUAGAAUUUUAAUUAAUAUAUACU-U ((((((((.(((((.....((((..(((.((....)).)))..))))(.((((......)---)))...)..))))).).)))))))............-. ( -21.00) >DroWil_CAF1 36258 97 + 1 UUAGAAGCAAUGGACAAGGUGGGCGAUGUGCGAAAGGUUAUAGCUCAGGUGAGUUUCCCACUG--AUGUCAAUUGACUGAACAUUAAG-AACAAGUCCA-A ..........(((((..((((((.......(....).....(((((....))))).))))))(--((((((......)).)))))...-.....)))))-. ( -24.90) >DroYak_CAF1 28856 97 + 1 UUGGAAUCAAUGGACAAAGUGGGUGAUGUCCGCAAGGUUAUUGCUCAGGUGAAGUAUAGC---UUUGUACACUUUAUUGAAUUUUAACUAAUGUGUACA-A ((((((((((((((.....((((..(((.((....)).)))..)))).(..(((.....)---))..)....))))))).)))))))............-. ( -23.40) >consensus UUGGAAUCAAUGGACAAAGUGGGUGAUGUUCGCAAGGUUAUUGCUCAGGUGAAGUAUAAC___UUAAUAAAUUUUAUAGAACCUUAACUAAUAUCUAAA_A ...................(((((((((.((....)).))))))))).(((((((.((.........)).)))))))........................ (-13.43 = -13.02 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:52 2006