| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,555,509 – 6,555,609 |
| Length | 100 |
| Max. P | 0.873261 |
| Location | 6,555,509 – 6,555,609 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.68 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -10.49 |
| Energy contribution | -10.27 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.873261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6555509 100 - 23771897 AGGAUUCUUUUGCAUACAAGGA-UUUUUCUUUCAGUGUUUU--UGGGUGACGGAUUCGUACAGGUACAGUGUGCAGGUGUGCUUGUAUUGUAUGUGU------GU----UUGU ...........(((((((((((-((..((.(((((.....)--)))).))..))))).((((((((((.(.....).))))))))))))))))))..------..----.... ( -28.50) >DroSec_CAF1 18226 101 - 1 AGAAUCCUUUUGCAUACAAGGAAUUUUUCUCUCAGUGCAUU--UGGGUGACGGAUUCGUACAGGUACAGUGUGCAGGUGUGCUUGUAUUGUAUGUGU------GU----UUGU ...........((((((((.(((((..((.(((((.....)--)))).))..))))).((((((((((.(.....).))))))))))))))))))..------..----.... ( -31.80) >DroSim_CAF1 18325 104 - 1 ------CUUUUGCAUAUAAGGAAUUUUUCUCUCAGUGUAUU--UGGGUGACGGAUUCGUACAGGUACAG-GUGCAGGUGUGCUUGUAUUGUAUGUGUUGGUGUGUUGUGUUGU ------.....((((((...(((((..((.(((((.....)--)))).))..)))))((((((.(((((-(..(....)..))))))))))))......))))))........ ( -30.50) >DroEre_CAF1 18424 99 - 1 AGUUUCCUUUUGCAUACUACGCUUUUUUCUUGCUGUGUAUA--UGGGUGACGGAUUCGUAUAGGUACGGUGUGCAGAUGGGC--UUGUAGUAUGUGU------GA----GUGU ......(((.(((((((((((((..((((.(((((((((((--(((((.....)))))))))..))))))).).)))..)))--..)))))))))).------))----)... ( -28.60) >DroYak_CAF1 19394 98 - 1 AGAAUCCUUUUGCAUACUAUG-UUUUUUCUUGCAGUGUAUA--UGGGUGACGGAUUCGUACAGGUACGGUGUGCAGGUGCUU--GUAUAGUAUGUGU------GU----UUGU .((((((......((((..((-(........)))..)))).--..(....)))))))((((((((((.(....)..))))))--)))).........------..----.... ( -25.20) >DroAna_CAF1 29646 96 - 1 AUAG-CUCUUUUCAUAAAA----CAUUUCUCUCAGUGUCUCAGCGGGAGACGGAUGUCU--GGAUGUGUUGUGCAAAUGUGCAGGUGUCGGAUGUAU------UU----AUGU ....-.......(((((((----(((((.......((((((.....))))))(((..((--(.((((.........)))).)))..))))))))).)------))----))). ( -23.80) >consensus AGAAUCCUUUUGCAUACAAGGA_UUUUUCUCUCAGUGUAUU__UGGGUGACGGAUUCGUACAGGUACAGUGUGCAGGUGUGCUUGUAUUGUAUGUGU______GU____UUGU ........(((((((((............................(....)......(((....))).))))))))).................................... (-10.49 = -10.27 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:49 2006