Locus 2314

Sequence ID 3L_DroMel_CAF1
Location 6,507,679 – 6,507,786
Length 107
Max. P 0.793245
window3572

overview

Window 2

Location 6,507,679 – 6,507,786
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.51
Mean single sequence MFE -36.98
Consensus MFE -32.16
Energy contribution -31.96
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.59
SVM RNA-class probability 0.793245
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6507679 107 - 23771897
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUGGCGUUUC
..(((.((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----)).))).... ( -35.90)
>DroSec_CAF1 2900 107 - 1
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUUGCGUUUU
..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----))..)).... ( -36.90)
>DroSim_CAF1 2920 107 - 1
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUUGCGUUUC
..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----))..)).... ( -36.90)
>DroEre_CAF1 2898 107 - 1
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGUGGCUGUCGUUAGCGUU---------GGGUAUAUGU----GUUGUGCUUC
......(((((((((((((......(((..(((....)))(((((((.....)))))))...))).....))))))))))).))...---------(((((((...----..))))))). ( -37.20)
>DroYak_CAF1 2927 120 - 1
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGUUGUCGUUAGCGUUGGCUGCAUUGGGUAGAUGUGUUUGUUGUGCUUC
....((((.......))))......((..((((((((.((.((((.(((.((..(((((..((.((((((((.....)))))))).))..))))))).))).))))))))))))))..)) ( -38.00)
>consensus
AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU_________GGGUAGAUGU____GUUGCGUUUC
..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((..............)))))....))..)).... (-32.16 = -31.96 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:19 2006