Locus 2310

Sequence ID 3L_DroMel_CAF1
Location 6,506,117 – 6,506,210
Length 93
Max. P 0.875714
window3566

overview

Window 6

Location 6,506,117 – 6,506,210
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 73.90
Mean single sequence MFE -32.20
Consensus MFE -13.03
Energy contribution -12.63
Covariance contribution -0.40
Combinations/Pair 1.53
Mean z-score -2.20
Structure conservation index 0.40
SVM decision value 0.89
SVM RNA-class probability 0.875714
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6506117 93 + 23771897
UGAUUACCGCAGUAGUGCUGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGCCGAAGUGGAAGCGC---CGAAAGCGGUGAAGAGGA
...(((((((((.....))...((((....(((((.((((.((.((.......)).)).))))...))))).)))---)....)))))))...... ( -33.10)
>DroVir_CAF1 1440 92 + 1
UGAUUAUCGUGGCAGUGGCGAUGGCGGCGAU---GGCGCUGCCGCUGGAGGCGGCUCUGCUGCUGGUGGCAACGAUGGGGAUAGUGGAGAUGAGG-
(.(((((((..((((.(((...(((((((..---..)))))))((.....)).)))))))..)...((....)).....)))))).)........- ( -34.60)
>DroSim_CAF1 1432 93 + 1
UGAUUACCGCAGUAGUGCUGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAAGCGGUGGCCGCAGUGGAAGCGC---AGAAAGCGGUGAAGAGGA
...(((((((((.....))....(((....((((.(((((.((.((.......)).)).)))))...)))).)))---.....)))))))...... ( -32.80)
>DroEre_CAF1 1389 93 + 1
UGAUUACCGCAGUAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCAGUGGCAGAGGUGGCAGCAC---UGAAAGCGGUGAUGAGGA
(.((((((((.....(((((..(.(.....(((((.((....)).)))))..).)..)))))..((((....)))---)....)))))))).)... ( -31.50)
>DroYak_CAF1 1314 93 + 1
UGAUUACCGCAGCAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGUAGAAGUGGCAGCGC---CGAAAGCGGUGAUGAGGA
(.((((((((..((.(((((..(.((.......)).)..))))).)).....((((.((.((....)).)).)))---)....)))))))).)... ( -35.00)
>DroAna_CAF1 20083 81 + 1
CGACUACCGGAGCAGUGCCGAGGGAGAGGACUCUGGUGGGGGAGGUGGCGGAAGCCG------AGA------UGA---CGACAGCGGCGACGAGAU
((.((((((((((....((...))....).)))))))))......((((....))))------...------...---))....((....)).... ( -26.20)
>consensus
UGAUUACCGCAGCAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGCAGAAGUGGCAGCGC___CGAAAGCGGUGAUGAGGA
...(((((((..((.(((((..(.((.......)).)..))))).))..................((....))..........)))))))...... (-13.03 = -12.63 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:13 2006