| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,496,166 – 6,496,257 |
| Length | 91 |
| Max. P | 0.564162 |
| Location | 6,496,166 – 6,496,257 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 77.60 |
| Mean single sequence MFE | -26.59 |
| Consensus MFE | -14.47 |
| Energy contribution | -15.25 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6496166 91 + 23771897 AU----AUGUACAUGUAGGGCCAUUAAGACCUUUGUAAACUGCGGCAGGCAUAUGCACUUAAUGGCUAAGCAC---ACACUCACA---------AGGACAAAUUCAG ..----.(((...(((..((((((((((.....(((.....)))(((......))).))))))))))..))).---)))......---------............. ( -19.80) >DroSec_CAF1 30498 98 + 1 AUCUGUAUGUACUUGUAGGGCCAUUAAGACCUUUGUAAACUGCGGCAGGCAUAUGCACUUAAUGGCUAAGCACACUACACUCACA---------AGGACAAAUUCAG ..(((..(((.(((((((((((((((((.....(((.....)))(((......))).)))))))))).((....))...)).)))---------)).)))....))) ( -23.70) >DroSim_CAF1 30892 98 + 1 AUACUUACGUACAAGUAGGGCCAUUAAGGCCGUGGUAAAGCCCGGCGGGGAAUUGCACUUAUCGGGUAAGCACGCCACACUCACA---------AUGACAAAUUCGG .(((((......))))).((((.....))))(((((...((((((..((........))..))))))......))))).......---------............. ( -28.60) >DroEre_CAF1 32731 90 + 1 AU----AUGUACGUGUAGGGCCAUUAAGACCUUUGUAAACUGCGGCAGGCAUAUGCACUUAAUGGCUAAGCAC---ACACUCACA---------AGGACA-AUUCAG ..----......((((..((((((((((.....(((.....)))(((......))).))))))))))..))))---.........---------......-...... ( -23.50) >DroAna_CAF1 31421 97 + 1 GU------GUGUGUGU-UGGCCGUUAAGACCUCUGUAAACUGCGGCAGGCAUAUGCACUUAAUGGCUAAACAC---ACACCCACGCGGUCGAACAGGACAAAUUCGG ((------((((((.(-(((((((((((..((((((.....)))).))((....)).))))))))))))))))---)))).......(((......)))........ ( -35.70) >DroPer_CAF1 41979 90 + 1 GU----GUGUGCAUUUGGGGCCAUUAAGACCUCUGUAAACUGCGGCAGGCAUAUGCAGUUAAUGGCUAAACAC---ACACACACA---------AGCACACAGA-UG ((----(((((.......(((((((((.....(((((...(((.....)))..))))))))))))))......---.))))))).---------..........-.. ( -28.24) >consensus AU____AUGUACAUGUAGGGCCAUUAAGACCUUUGUAAACUGCGGCAGGCAUAUGCACUUAAUGGCUAAGCAC___ACACUCACA_________AGGACAAAUUCAG ........((...(((..((((((((((....((((........))))((....)).))))))))))..)))....))............................. (-14.47 = -15.25 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:07 2006