Locus 2291

Sequence ID 3L_DroMel_CAF1
Location 6,450,881 – 6,450,979
Length 98
Max. P 0.626811
window3540

overview

Window 0

Location 6,450,881 – 6,450,979
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.80
Mean single sequence MFE -15.57
Consensus MFE -8.68
Energy contribution -8.90
Covariance contribution 0.22
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.56
SVM decision value 0.19
SVM RNA-class probability 0.626811
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6450881 98 + 23771897
AUUAAUUGGCCAAAACAAGCGGC-G---AAUAAAUUAAACUGAAAAUAAUGAAUAAACACUUAAAUUUUGGCAUUUAGCUAGAAAUAUGCCGCAAUUAGUCA
.....(((.......)))(((((-(---.....................((......))......(((((((.....)))))))...))))))......... ( -15.80)
>DroVir_CAF1 262661 94 + 1
AUUAAUUGCUCAAGACAAACAAC-AAGCAAUAAAUAAAAAUG---CUAAUAAAUAGA----CACAUUUUGGCAUUUAGCUAGAAAAAUACCGCAAUUAGUCA
(((((((((..............-.((((...........))---))..........----....(((((((.....))))))).......))))))))).. ( -15.80)
>DroGri_CAF1 194726 95 + 1
AUUAAUUGCCCAAGACAAACAGCUAGGCAAUAAAUAAAAAUG---CUAAUAAAUAUA----CAUAUUUUGGCAUUCGGCUAGAAAAAUACCGCAAUUAGUCA
(((((((((................((((...........))---))..........----....(((((((.....))))))).......))))))))).. ( -15.30)
>DroSim_CAF1 194434 98 + 1
AUUAAUUGGCCAAAACAAGCGGC-G---AAUAAAUUAAACUGAAAAUAAUGAAUAAACACUCAAAUUUUGGCAUUUAGCUAGAAAUAUGCCGCAAUUAGUCA
.....(((.......)))(((((-(---.....................(((........)))..(((((((.....)))))))...))))))......... ( -17.70)
>DroMoj_CAF1 213704 94 + 1
AUUAAUUGGCUAAGACAAACAGC-GGGCAAUAAAUAAAAAUG---CUAAUAAAUAGA----CACAUUUUGGCAUUUAGCUAGAAAAAUACGACAAUUAGUCA
.....(((((((((.......(.-...)............((---((((........----......)))))))))))))))........(((.....))). ( -13.94)
>DroAna_CAF1 191603 85 + 1
AUUAAUUGGCCGAAACAAGGGGC-G---CACAAAUA-AG------CUGAUGAAUUAAC------AUUUUGGCAUUUAGCUAGAAAAAUACCACAAUUAGUCA
(((((((((((.........)))-(---(.......-.)------)............------.(((((((.....)))))))........)))))))).. ( -14.90)
>consensus
AUUAAUUGGCCAAAACAAACAGC_G___AAUAAAUAAAAAUG___CUAAUAAAUAAA____CAAAUUUUGGCAUUUAGCUAGAAAAAUACCGCAAUUAGUCA
(((((((((((.........)))..........................................(((((((.....)))))))........)))))))).. ( -8.68 =  -8.90 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:48 2006