Locus 2288

Sequence ID 3L_DroMel_CAF1
Location 6,437,581 – 6,437,676
Length 95
Max. P 0.500000
window3537

overview

Window 7

Location 6,437,581 – 6,437,676
Length 95
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 86.79
Mean single sequence MFE -24.83
Consensus MFE -18.84
Energy contribution -18.88
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -1.49
Structure conservation index 0.76
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6437581 95 + 23771897
GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACCCAUUUUUAU--UUUUUUGCGAAGGGAUUAAGCUCGCUCUGGGAAGAGCCGC-
......(((((..(((..(((((..........((..(-------(((((.(.((.......--.....)).)))))))..))..)))))..)))....)))))- ( -22.50)
>DroSec_CAF1 175460 97 + 1
GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACUCAUUUUUUUUUUUUUUUUCGAAGGGAUUAAGCCCGCCAAGGGAAGAGCCGC-
......(((((..((((((((((((((...))))))..-------..............................(((......)))))))))))....)))))- ( -27.50)
>DroSim_CAF1 181326 96 + 1
GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACCCAUUUUUUUU-UUUUUUGCGAUGGGAUUAAGCCCGCUCUGGGAAGAGCCGC-
......(((((.(((...)))..............(((-------((((..((((((......-........))))))....((....))..))))))))))))- ( -23.74)
>DroEre_CAF1 180628 90 + 1
GUACCUGCGGCAGCCUUUGGCAAAUAUUUUAUAUUUUU-------UCCUUACCCGUUU--------UUUGGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGCCGCA
......(((((.(((...)))..............(((-------((((....((((.--------...))))..(((......))).....)))))))))))). ( -27.10)
>DroYak_CAF1 190250 98 + 1
GUACCUGCGGCAGCCUUUGGCAAAUAUUUUAUAUUUUUUACCCAUUCCUUGCCCAUUUUUU---UUUUUGGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGC----
......(.(((.(((...)))......................((((((((((........---.....))).)))))))...))))(((((....)))))---- ( -23.32)
>consensus
GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU_______UCCUUACCCAUUUUUUU__UUUUUUGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGCCGC_
......(((((..(((..(((((((((...)))))).......................................(((......))))))..)))....))))). (-18.84 = -18.88 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006